C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342665 SOX12-001 ENSG00000177732 9606 + 20:325401-330224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342665 1.910±0.00 3.005±0.00 0.934±0.00 1.675±1.29 1.490±0.86 3.438±3.16 1.317±1.10 2.684±2.40 0.893±0.06 1.700±1.30 0.588±0.36 6.803±4.05 3.486±0.56 8.089±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0001077 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001105 ISS RNA polymerase II transcription coactivator activity
GO:0003677 NAS DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0021510 ISS spinal cord development
GO:0032993 IEA protein-DNA complex
GO:0045165 IEP cell fate commitment
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0065004 IEA protein-DNA complex assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182625 Sox12-002 protein_coding Mus_musculus 0 2115
ENSMUST00000063332 Sox12-201 protein_coding Mus_musculus 0 1788
ENSDART00000063476 sox4b-201 protein_coding Danio_rerio 0 305
ENSMUST00000067230 Sox4-001 protein_coding Mus_musculus 0 274
ENSMUST00000079063 Sox11-001 protein_coding Mus_musculus 0 265

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