C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: X-box binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344347 XBP1-007 ENSG00000100219 9606 - 22:28795175-28800524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLungOvaryPlacentaENST00000344347
Transcript ID Breast Colon Heart Kidney Lung Ovary Placenta
ENST00000344347 20.740±0.00 9.302±0.00 17.922±0.00 33.065±0.00 75.328±0.00 55.889±46.76 54.280±29.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0001 VISTA 22:28282570-28883176
CIL_0004TU CIL_0004TU_0002 CGP 22:28794555-29057487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS:IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006955 TAS immune response
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0043565 IEA sequence-specific DNA binding
GO:0044267 TAS cellular protein metabolic process
GO:1900103 IMP positive regulation of endoplasmic reticulum unfolded protein response

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063084 Xbp1-001 protein_coding Mus_musculus 0 996
ENSMUST00000149623 Xbp1-004 protein_coding Mus_musculus 0 616
ENSMUST00000149159 Xbp1-003 protein_coding Mus_musculus 0 529
ENSMUST00000145588 Xbp1-002 retained_intron Mus_musculus 0 318

Loading