C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344528 SH3BP4-003 ENSG00000130147 9606 + 2:234978703-235055648 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleENST00000344528
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle
ENST00000344528 4.230±0.00 1.271±0.00 2.015±0.00 2.192±0.00 1.794±0.00 1.646±0.00 9.534±0.00 2.215±1.20 2.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RR CIL_0004RR_0002 CGP 2:234493041-235055714
CIL_0003R3 CIL_0003R3_0001 CGP 2:234951973-236131800

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005092 IMP GDP-dissociation inhibitor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005905 IEA coated pit
GO:0006897 IEA endocytosis
GO:0008285 IMP negative regulation of cell proliferation
GO:0010508 IMP positive regulation of autophagy
GO:0017016 IPI Ras GTPase binding
GO:0030308 IMP negative regulation of cell growth
GO:0031410 IEA cytoplasmic vesicle
GO:0032007 IMP negative regulation of TOR signaling
GO:0034260 IDA negative regulation of GTPase activity
GO:0042802 IPI identical protein binding
GO:0050790 IMP regulation of catalytic activity
GO:0061462 IMP protein localization to lysosome
GO:0070062 IDA extracellular vesicular exosome
GO:0071230 IMP cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000066279 Sh3bp4-001 protein_coding Mus_musculus 0 3081

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