C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003R3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130147-ENSG00000157985 CGP 9606 2:234951973-236131800
GeneTranscriptPositionBiotype
ENSG00000130147 (SH3BP4)
SH3-domain binding protein 4 		ENST00000344528 (SH3BP4-003) 234978703-235055648 protein_coding
ENST00000392011 (SH3BP4-001) 234951973-235055714 protein_coding
ENST00000409212 (SH3BP4-002) 234978685-235055648 protein_coding
ENST00000416021 (SH3BP4-005) 234952076-235041135 protein_coding
ENST00000444916 (SH3BP4-007) 234978705-235040937 protein_coding
ENST00000446904 (SH3BP4-008) 234981624-235041288 protein_coding
ENST00000454947 (SH3BP4-009) 234994840-235040942 protein_coding
ENST00000462602 (SH3BP4-011) 234981634-235008594 processed_transcript
ENST00000484097 (SH3BP4-004) 234952035-234953190 processed_transcript
ENST00000489601 (SH3BP4-006) 234978700-234979898 processed_transcript
ENST00000493436 (SH3BP4-010) 234994524-234995993 processed_transcript
ENSG00000157985 (AGAP1)
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 		ENST00000304032 (AGAP1-001) 235494107-236131800 protein_coding
ENST00000336665 (AGAP1-002) 235494107-236126554 protein_coding
ENST00000402604 (AGAP1-006) 235524324-235744811 protein_coding
ENST00000409457 (AGAP1-003) 235494089-235853202 protein_coding
ENST00000409538 (AGAP1-004) 235669604-236126554 protein_coding
ENST00000418654 (AGAP1-007) 235908842-236120246 protein_coding
ENST00000428334 (AGAP1-201) 235709178-236131800 protein_coding
ENST00000448025 (AGAP1-010) 235883395-236036697 protein_coding
ENST00000453371 (AGAP1-005) 236045937-236125482 processed_transcript
ENST00000466575 (AGAP1-008) 236040612-236120279 retained_intron
ENST00000482882 (AGAP1-009) 236040751-236049831 retained_intron
ENST00000614409 (AGAP1-202) 235709177-236131800 protein_coding
ENST00000619456 (AGAP1-203) 235709177-235852853 protein_coding
ENSG00000221704 (AC012305.1)
 ENST00000408777 (AC012305.1-201) 235571931-235572003 miRNA
ENSG00000222007 (AC064874.1)
 ENST00000409661 (AC064874.1-002) 235773855-235775794 antisense
ENST00000440101 (AC064874.1-001) 235773855-235783387 antisense
ENSG00000226542 (AC114814.4)
 ENST00000444926 (AC114814.4-001) 235084822-235088586 lincRNA
ENSG00000228499 (TMSB10P1)
thymosin beta 10 pseudogene 1 		ENST00000415070 (TMSB10P1-001) 235882362-235882493 processed_pseudogene
ENSG00000231032 (AC114814.2)
 ENST00000419195 (AC114814.2-001) 235147016-235147500 processed_pseudogene
ENSG00000235293 (AC114814.3)
 ENST00000449362 (AC114814.3-001) 235177896-235178905 lincRNA
ENSG00000235529 (AGAP1-IT1)
AGAP1 intronic transcript 1 (non-protein coding) 		ENST00000440498 (AGAP1-IT1-001) 235505751-235507566 sense_intronic
ENSG00000264676 (RN7SL204P)
RNA, 7SL, cytoplasmic 204, pseudogene 		ENST00000582831 (RN7SL204P-201) 236072295-236072556 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003R3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036206-ENSMUSG00000055013 CGP 10090 1:89070415-89897617
GeneTranscriptPositionBiotype
ENSMUSG00000036206 (Sh3bp4)
SH3-domain binding protein 4 		ENSMUST00000066279 (Sh3bp4-001) 89070415-89155068 protein_coding
ENSMUST00000123745 (Sh3bp4-002) 89070453-89112860 processed_transcript
ENSMUSG00000055013 (Agap1)
ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 		ENSMUST00000027521 (Agap1-001) 89454806-89897617 protein_coding
ENSMUST00000074945 (Agap1-003) 89580236-89895277 protein_coding
ENSMUST00000185417 (Agap1-004) 89455256-89459706 retained_intron
ENSMUST00000190096 (Agap1-002) 89454874-89890001 protein_coding
ENSMUSG00000088371 (Gm25180)
predicted gene, 25180 		ENSMUST00000157746 (Gm25180-201) 89563360-89563474 rRNA
ENSMUSG00000088775 (Gm26037)
predicted gene, 26037 		ENSMUST00000158150 (Gm26037-201) 89684802-89685112 misc_RNA
ENSMUSG00000099938 (RP23-350B16.2)
RIKEN cDNA C030007H22 gene 		ENSMUST00000186258 (RP23-350B16.2-001) 89360342-89406133 lincRNA
ENSMUSG00000101288 (RP23-350B16.1)
predicted gene 28342 		ENSMUST00000190308 (RP23-350B16.1-001) 89302719-89358144 lincRNA
ENSMUSG00000101662 (RP23-205B8.1)
predicted gene 28499 		ENSMUST00000191576 (RP23-205B8.1-001) 89568765-89576602 sense_intronic
ENSMUSG00000102009 (RP23-205B8.2)
RIKEN cDNA 4933400F21 gene 		ENSMUST00000186098 (RP23-205B8.2-001) 89650529-89683908 antisense
ENSMUST00000187011 (RP23-205B8.2-003) 89681085-89683888 retained_intron
ENSMUST00000187295 (RP23-205B8.2-002) 89677487-89683894 antisense
ENSMUSG00000102083 (RP24-217I2.2)
predicted gene 5259 		ENSMUST00000191231 (RP24-217I2.2-001) 89256182-89256981 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R3_0001ENSG00000130147ENST00000344528ENST00000392011ENST00000409212ENSG00000157985ENST00000304032ENST00000336665ENST00000402604ENST00000409538ENST00000428334ENST00000448025ENST00000453371ENST00000466575ENST00000614409ENST00000619456ENSG00000221704ENST00000408777ENSG00000222007ENST00000409661ENST00000440101ENSG00000226542ENST00000444926ENSG00000228499ENST00000415070ENSG00000231032ENST00000419195ENSG00000235293ENST00000449362ENSG00000235529ENST00000440498ENSG00000264676ENST00000582831CIL_0003R3_0002ENSMUSG00000036206ENSMUST00000066279ENSMUSG00000055013ENSMUST00000027521ENSMUST00000074945ENSMUST00000190096ENSMUSG00000088371ENSMUST00000157746ENSMUSG00000088775ENSMUST00000158150ENSMUSG00000099938ENSMUST00000186258ENSMUSG00000101288ENSMUST00000190308ENSMUSG00000101662ENSMUST00000191576ENSMUSG00000102009ENSMUST00000186098ENSMUST00000187011ENSMUST00000187295ENSMUSG00000102083ENSMUST00000191231
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130147 ENST00000344528 4.230±0.00 1.271±0.00 N/A 2.015±0.00 2.192±0.00 1.794±0.00 1.646±0.00 9.534±0.00 2.215±1.20 N/A 2.141±0.00 N/A N/A N/A
ENST00000392011 4.234±0.00 2.394±0.00 N/A 1.639±0.88 N/A 2.174±0.00 0.804±0.14 N/A 2.379±0.00 3.175±2.22 N/A 9.920±6.67 19.857±8.05 6.683±5.36
ENST00000409212 N/A N/A N/A N/A 0.997±0.25 N/A N/A N/A N/A 0.648±0.00 N/A N/A N/A N/A
ENST00000416021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157985 ENST00000304032 0.744±0.00 0.825±0.00 0.989±0.00 4.427±0.00 1.595±0.00 N/A 0.872±0.77 1.265±0.00 0.546±0.00 1.380±0.94 1.020±0.90 1.746±0.90 0.927±0.31 2.190±1.18
ENST00000336665 N/A N/A 1.721±0.00 N/A 1.302±0.00 2.565±0.00 0.444±0.00 N/A 1.687±0.00 1.498±0.00 N/A 1.761±0.74 0.776±0.05 N/A
ENST00000402604 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.465±0.00 N/A N/A N/A N/A
ENST00000409457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409538 N/A N/A N/A N/A 1.177±0.00 1.295±0.00 0.142±0.00 N/A N/A 0.451±0.00 N/A N/A N/A N/A
ENST00000418654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428334 0.912±0.00 N/A N/A 2.140±0.00 1.957±0.00 4.942±0.00 N/A 0.821±0.55 N/A N/A 0.225±0.00 0.494±0.00 0.529±0.09 1.623±0.00
ENST00000448025 N/A N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A
ENST00000453371 2.042±0.00 2.152±0.00 N/A N/A N/A N/A N/A 0.678±0.00 1.185±0.00 N/A N/A N/A 1.486±0.09 N/A
ENST00000466575 N/A N/A 35.583±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614409 1.678±0.00 0.752±0.00 0.751±0.00 10.630±5.57 0.691±0.00 1.008±0.05 1.124±0.98 0.607±0.00 0.605±0.26 N/A 0.885±0.00 1.108±0.14 0.711±0.21 2.390±0.00
ENST00000619456 N/A N/A 7.181±0.00 N/A N/A 10.154±0.00 1.928±0.00 N/A 9.938±0.00 3.183±0.00 1.374±0.00 12.109±0.00 N/A N/A
ENSG00000221704 ENST00000408777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.660±0.00
ENSG00000222007 ENST00000409661 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.957±0.00
ENST00000440101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.527±0.00
ENSG00000226542 ENST00000444926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A
ENSG00000228499 ENST00000415070 1.000±0.00 0.221±0.00 N/A 0.242±0.00 N/A N/A N/A N/A N/A N/A N/A 46.614±0.00 N/A N/A
ENSG00000231032 ENST00000419195 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235293 ENST00000449362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.903±0.38
ENSG00000235529 ENST00000440498 N/A 0.060±0.00 0.232±0.00 0.331±0.00 0.352±0.01 0.257±0.08 0.061±0.01 0.705±0.00 0.358±0.00 1.024±0.00 N/A 0.516±0.38 0.741±0.64 0.267±0.07
ENSG00000264676 ENST00000582831 0.173±0.00 0.741±0.00 N/A 0.106±0.00 0.591±0.00 0.089±0.00 N/A 0.099±0.00 0.085±0.00 0.655±0.00 0.083±0.00 0.917±0.76 N/A 0.522±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036206 ENSMUST00000066279 13.183±2.44 7.666±0.89 5.539±0.27 6.606±2.37 10.781±1.83 9.682±0.99 3.175±0.64 6.754±0.72 0.390±0.23 18.630±1.09 0.737±0.11 16.327±4.05 5.377±1.80 1.003±0.38
ENSMUST00000123745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055013 ENSMUST00000027521 1.750±0.48 4.700±0.48 N/A 6.671±0.00 2.912±1.17 6.476±0.79 1.362±0.28 5.748±1.00 0.427±0.16 6.266±0.70 0.214±0.03 4.054±1.62 0.427±0.00 0.749±0.00
ENSMUST00000074945 3.206±1.29 1.271±0.32 0.822±0.00 12.783±5.67 3.084±1.03 3.078±0.00 1.540±0.54 1.275±0.03 0.134±0.01 2.351±0.10 1.299±0.16 3.386±2.05 1.045±0.27 0.125±0.00
ENSMUST00000185417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190096 4.222±1.69 4.874±2.35 N/A 2.437±0.00 3.355±0.38 7.856±2.27 2.258±0.28 8.331±1.42 0.947±0.19 6.206±0.81 0.639±0.12 5.882±1.59 3.318±0.99 3.590±2.19
ENSMUSG00000088371 ENSMUST00000157746 N/A N/A N/A 24.811±0.00 1697.000±0.00 N/A N/A N/A N/A N/A N/A 18.344±0.00 N/A 1184.350±0.00
ENSMUSG00000088775 ENSMUST00000158150 0.288±0.00 N/A 0.111±0.00 0.150±0.00 N/A N/A N/A N/A N/A 0.315±0.00 N/A 0.650±0.33 N/A 0.190±0.00
ENSMUSG00000099938 ENSMUST00000186258 N/A N/A N/A 0.073±0.01 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A 0.045±0.00 N/A
ENSMUSG00000101288 ENSMUST00000190308 N/A N/A N/A 0.017±0.00 N/A N/A 0.066±0.00 N/A N/A 0.173±0.07 N/A 0.228±0.03 N/A N/A
ENSMUSG00000101662 ENSMUST00000191576 0.437±0.21 N/A 0.088±0.03 0.057±0.03 0.246±0.13 N/A N/A 0.106±0.01 0.049±0.03 0.132±0.01 N/A 0.327±0.16 0.014±0.00 0.175±0.12
ENSMUSG00000102009 ENSMUST00000186098 N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A 0.049±0.00 N/A N/A 0.044±0.00 N/A N/A
ENSMUST00000187011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.244±0.00
ENSMUST00000187295 0.088±0.03 0.057±0.04 0.026±0.00 0.109±0.11 0.077±0.03 0.067±0.02 0.063±0.03 0.075±0.00 0.036±0.02 0.271±0.03 0.019±0.00 0.052±0.04 0.057±0.03 4.764±2.43
ENSMUSG00000102083 ENSMUST00000191231 N/A N/A 0.024±0.00 0.006±0.00 N/A N/A N/A 0.053±0.00 0.007±0.00 N/A N/A 0.158±0.09 0.065±0.00 N/A

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