C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000LC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183117-ENSG00000147316 CGP 9606 8:2935353-6643623
GeneTranscriptPositionBiotype
ENSG00000091879 (ANGPT2)
angiopoietin 2 		ENST00000325203 (ANGPT2-001) 6499651-6563409 protein_coding
ENST00000338312 (ANGPT2-002) 6503080-6563044 protein_coding
ENST00000523120 (ANGPT2-003) 6507564-6563245 protein_coding
ENSG00000147316 (MCPH1)
microcephalin 1 		ENST00000344683 (MCPH1-001) 6406592-6643623 protein_coding
ENST00000519221 (MCPH1-007) 6477266-6621671 processed_transcript
ENST00000519480 (MCPH1-002) 6406596-6446567 protein_coding
ENST00000521129 (MCPH1-004) 6477359-6621621 processed_transcript
ENST00000521175 (MCPH1-005) 6621452-6643370 processed_transcript
ENST00000522020 (MCPH1-006) 6455202-6494542 processed_transcript
ENST00000522905 (MCPH1-003) 6406643-6445890 protein_coding
ENSG00000183117 (CSMD1)
CUB and Sushi multiple domains 1 		ENST00000335551 (CSMD1-006) 2935353-3409607 protein_coding
ENST00000400186 (CSMD1-004) 2938099-4994701 protein_coding
ENST00000518151 (CSMD1-003) 3702147-3708496 processed_transcript
ENST00000519090 (CSMD1-013) 3586165-3616739 processed_transcript
ENST00000519623 (CSMD1-009) 2999979-3043788 processed_transcript
ENST00000520002 (CSMD1-001) 2938099-4994972 protein_coding
ENST00000520451 (CSMD1-012) 3151432-3183146 processed_transcript
ENST00000520561 (CSMD1-011) 3110213-3113363 processed_transcript
ENST00000520630 (CSMD1-002) 3468712-3515359 processed_transcript
ENST00000521646 (CSMD1-014) 3278364-3284346 processed_transcript
ENST00000523062 (CSMD1-010) 3096902-3107155 retained_intron
ENST00000523387 (CSMD1-007) 3127386-3284654 processed_transcript
ENST00000523488 (CSMD1-008) 3151247-3396319 retained_intron
ENST00000524177 (CSMD1-015) 3468712-3469200 processed_transcript
ENST00000537824 (CSMD1-201) 2935354-4032100 protein_coding
ENST00000602557 (CSMD1-017) 2938099-4994972 protein_coding
ENST00000602723 (CSMD1-018) 2938099-4994701 protein_coding
ENSG00000240486 (RPL23AP54)
ribosomal protein L23a pseudogene 54 		ENST00000495129 (RPL23AP54-001) 5476548-5476966 processed_pseudogene
ENSG00000242079 (RN7SL318P)
RNA, 7SL, cytoplasmic 318, pseudogene 		ENST00000471955 (RN7SL318P-201) 5142411-5142707 misc_RNA
ENSG00000253510 (RP5-991O23.1)
 ENST00000517807 (RP5-991O23.1-001) 5506068-5509126 lincRNA
ENSG00000253550 (RP11-115C21.4)
 ENST00000514530 (RP11-115C21.4-001) 6473845-6474288 processed_pseudogene
ENSG00000253571 (RP11-728L1.1)
 ENST00000520775 (RP11-728L1.1-001) 5848697-5849692 processed_pseudogene
ENSG00000253880 (RP11-124B13.1)
 ENST00000519555 (RP11-124B13.1-001) 6044353-6257537 lincRNA
ENSG00000254007 (RP11-281H11.1)
 ENST00000518926 (RP11-281H11.1-001) 5659679-5670077 lincRNA
ENSG00000254244 (PAICSP4)
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 		ENST00000517543 (PAICSP4-001) 4787332-4788584 processed_pseudogene
ENSG00000271743 (CTD-2541M15.3)
 ENST00000607368 (CTD-2541M15.3-001) 6615604-6617198 lincRNA
ENSG00000273876 (RP11-221H10.2)
 ENST00000611579 (RP11-221H10.2-001) 5127919-5128233 unprocessed_pseudogene
ENSG00000276580 (MIR8055)
microRNA 8055 		ENST00000610739 (MIR8055-201) 6622124-6622220 miRNA
CIL_0000LC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060924-ENSMUSG00000039842 CGP 10090 8:15892537-18803189
GeneTranscriptPositionBiotype
ENSMUSG00000031465 (Angpt2)
angiopoietin 2 		ENSMUST00000033846 (Angpt2-001) 18690263-18741562 protein_coding
ENSMUST00000170200 (Angpt2-002) 18692087-18699547 processed_transcript
ENSMUSG00000039842 (Mcph1)
microcephaly, primary autosomal recessive 1 		ENSMUST00000039412 (Mcph1-001) 18595131-18803189 protein_coding
ENSMUST00000124910 (Mcph1-002) 18595164-18712939 nonsense_mediated_decay
ENSMUST00000133417 (Mcph1-005) 18625563-18631880 protein_coding
ENSMUST00000141244 (Mcph1-006) 18632592-18652990 protein_coding
ENSMUST00000146819 (Mcph1-004) 18595582-18632901 protein_coding
ENSMUST00000153133 (Mcph1-003) 18595576-18689953 retained_intron
ENSMUSG00000060924 (Csmd1)
CUB and Sushi multiple domains 1 		ENSMUST00000082104 (Csmd1-001) 15892537-17535281 protein_coding
ENSMUST00000122983 (Csmd1-004) 17370233-17535377 processed_transcript
ENSMUST00000125551 (Csmd1-002) 15892545-15984812 retained_intron
ENSMUST00000131778 (Csmd1-003) 16079518-17535281 processed_transcript
ENSMUST00000133933 (Csmd1-005) 17214756-17535385 retained_intron
ENSMUST00000137947 (Csmd1-006) 16344863-17535586 processed_transcript
ENSMUST00000138348 (Csmd1-007) 16288022-17535281 retained_intron
ENSMUSG00000085150 (Gm16346)
predicted gene 16346 		ENSMUST00000129158 (Gm16346-001) 16226003-16232305 antisense
ENSMUSG00000087363 (Gm16347)
predicted gene 16347 		ENSMUST00000131707 (Gm16347-001) 16433186-16437040 antisense
ENSMUST00000149000 (Gm16347-002) 16433175-16435903 antisense
ENSMUSG00000087892 (Gm25278)
predicted gene, 25278 		ENSMUST00000157267 (Gm25278-201) 16852168-16852287 snoRNA
ENSMUSG00000090334 (Gm17149)
predicted gene 17149 		ENSMUST00000164712 (Gm17149-001) 18656615-18656989 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LC_0001ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519221ENST00000519480ENST00000521129ENST00000521175ENST00000522020ENST00000522905ENSG00000183117ENST00000335551ENST00000400186ENST00000518151ENST00000519090ENST00000519623ENST00000520002ENST00000520451ENST00000520561ENST00000520630ENST00000521646ENST00000523062ENST00000523387ENST00000523488ENST00000524177ENST00000537824ENST00000602557ENST00000602723ENSG00000240486ENST00000495129ENSG00000242079ENST00000471955ENSG00000253510ENST00000517807ENSG00000253550ENST00000514530ENSG00000253571ENST00000520775ENSG00000253880ENST00000519555ENSG00000254007ENST00000518926ENSG00000254244ENST00000517543ENSG00000271743ENST00000607368ENSG00000273876ENST00000611579ENSG00000276580ENST00000610739CIL_0000LC_0002ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000133417ENSMUST00000141244ENSMUST00000146819ENSMUST00000153133ENSMUSG00000060924ENSMUST00000082104ENSMUST00000122983ENSMUST00000125551ENSMUST00000131778ENSMUST00000133933ENSMUST00000137947ENSMUST00000138348ENSMUSG00000085150ENSMUST00000129158ENSMUSG00000087363ENSMUST00000131707ENSMUST00000149000ENSMUSG00000087892ENSMUST00000157267ENSMUSG00000090334ENSMUST00000164712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000LC_0001ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519480ENST00000522905ENSG00000183117ENST00000335551ENST00000400186ENST00000519623ENST00000520002ENST00000520630ENST00000521646ENST00000523387ENST00000523488ENST00000537824ENST00000602557ENST00000602723ENSG00000240486ENST00000495129ENSG00000242079ENST00000471955ENSG00000253510ENST00000517807ENSG00000253550ENST00000514530ENSG00000253571ENST00000520775ENSG00000253880ENST00000519555ENSG00000254007ENST00000518926ENSG00000254244ENST00000517543ENSG00000271743ENST00000607368ENSG00000273876ENST00000611579ENSG00000276580ENST00000610739CIL_0000LC_0002ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000146819ENSMUST00000153133ENSMUSG00000060924ENSMUST00000082104ENSMUST00000122983ENSMUST00000125551ENSMUST00000131778ENSMUST00000133933ENSMUST00000137947ENSMUST00000138348ENSMUSG00000085150ENSMUST00000129158ENSMUSG00000087363ENSMUST00000131707ENSMUSG00000087892ENSMUST00000157267ENSMUSG00000090334ENSMUST00000164712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091879 ENST00000325203 N/A N/A 0.284±0.00 0.474±0.00 1.038±0.00 0.420±0.00 0.376±0.00 0.552±0.00 0.894±0.65 1.337±0.00 N/A 0.693±0.00 1.254±0.00 N/A
ENST00000338312 8.363±0.00 5.688±0.00 N/A N/A 3.169±0.00 12.431±0.00 N/A N/A N/A 3.247±0.00 N/A 2.359±0.00 3.255±0.98 N/A
ENST00000523120 N/A N/A N/A N/A 1.118±0.00 N/A N/A 0.376±0.00 1.086±0.00 N/A N/A 1.261±0.00 N/A N/A
ENSG00000147316 ENST00000344683 2.835±0.00 3.677±0.00 0.522±0.00 1.334±0.65 1.070±0.00 1.281±0.00 2.111±0.00 2.009±0.00 0.997±0.00 1.742±0.00 4.341±0.00 1.666±0.28 2.034±0.35 4.123±0.43
ENST00000519221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519480 N/A N/A N/A 0.711±0.00 1.197±0.00 1.021±0.00 0.824±0.00 1.175±0.38 0.998±0.37 N/A N/A 1.683±0.23 1.647±0.00 N/A
ENST00000521129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522905 N/A N/A 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A 3.106±0.00
ENSG00000183117 ENST00000335551 0.025±0.00 0.009±0.00 N/A 0.497±0.00 0.073±0.00 N/A 0.014±0.00 N/A 0.072±0.00 N/A N/A 0.020±0.00 N/A N/A
ENST00000400186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENST00000518151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519623 N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A
ENST00000520002 N/A N/A N/A 0.552±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000520451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520630 N/A N/A N/A N/A N/A 1.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521646 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523387 N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523488 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A
ENST00000524177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537824 N/A N/A N/A 1.235±0.63 N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602557 N/A N/A N/A 0.552±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000602723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A
ENSG00000240486 ENST00000495129 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 0.035±0.00 N/A N/A N/A
ENSG00000242079 ENST00000471955 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00
ENSG00000253510 ENST00000517807 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A 0.008±0.00 N/A N/A N/A 0.627±0.56
ENSG00000253550 ENST00000514530 0.092±0.00 N/A 2.851±0.00 N/A 0.462±0.44 1.219±0.00 0.054±0.01 N/A 0.381±0.00 N/A N/A 0.038±0.00 0.079±0.04 0.156±0.00
ENSG00000253571 ENST00000520775 N/A 0.080±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000253880 ENST00000519555 0.180±0.00 0.222±0.00 N/A 0.105±0.00 0.089±0.02 0.090±0.00 0.149±0.00 0.260±0.00 N/A 0.243±0.00 0.361±0.00 0.195±0.04 N/A 1.370±1.08
ENSG00000254007 ENST00000518926 0.027±0.00 0.085±0.00 N/A 0.029±0.00 N/A N/A 0.039±0.00 0.154±0.00 0.049±0.00 N/A N/A N/A N/A 0.279±0.14
ENSG00000254244 ENST00000517543 N/A N/A N/A 0.893±0.00 N/A N/A 0.041±0.00 N/A N/A N/A 0.016±0.00 0.034±0.00 0.017±0.00 0.102±0.00
ENSG00000271743 ENST00000607368 0.040±0.00 0.169±0.00 0.123±0.00 0.582±0.13 0.049±0.01 0.083±0.02 0.073±0.04 0.051±0.03 0.156±0.00 N/A N/A 0.333±0.16 0.097±0.03 0.274±0.11
ENSG00000273876 ENST00000611579 N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 0.326±0.00 N/A N/A N/A 0.655±0.00
ENSG00000276580 ENST00000610739 0.918±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.050±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031465 ENSMUST00000033846 3.675±0.97 0.989±0.37 3.302±0.68 1.318±0.45 3.780±0.89 0.774±0.19 1.097±0.14 7.186±0.43 0.338±0.21 5.133±1.24 0.551±0.08 5.497±0.90 7.819±3.67 0.267±0.10
ENSMUST00000170200 N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A 13.878±0.00 53.462±36.41 1.865±1.22
ENSMUSG00000039842 ENSMUST00000039412 2.559±0.53 0.885±0.11 1.079±0.12 1.790±0.21 1.203±0.56 0.729±0.10 0.695±0.10 0.676±0.21 2.410±2.20 0.963±0.07 0.692±0.19 2.526±0.86 2.742±1.88 1.452±0.55
ENSMUST00000124910 N/A N/A N/A N/A 0.320±0.07 0.127±0.03 N/A 0.094±0.00 N/A N/A N/A 0.641±0.19 N/A 0.492±0.06
ENSMUST00000133417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146819 N/A N/A N/A 0.746±0.00 N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A 1.502±0.75 N/A
ENSMUST00000153133 N/A N/A N/A N/A N/A N/A N/A 0.306±0.10 N/A N/A N/A N/A 0.311±0.00 N/A
ENSMUSG00000060924 ENSMUST00000082104 0.206±0.14 0.130±0.03 0.065±0.03 1.188±0.52 0.231±0.07 0.032±0.01 0.020±0.00 0.119±0.06 0.008±0.01 0.035±0.00 0.011±0.00 1.285±0.44 0.005±0.00 0.091±0.05
ENSMUST00000122983 N/A 0.954±0.00 N/A N/A N/A 0.229±0.07 N/A N/A 0.021±0.01 N/A 0.088±0.00 6.288±1.59 N/A N/A
ENSMUST00000125551 N/A 0.134±0.00 0.087±0.00 1.582±0.00 0.108±0.00 0.050±0.01 N/A 0.128±0.06 0.009±0.01 N/A 0.031±0.01 0.813±0.23 0.023±0.03 0.835±0.62
ENSMUST00000131778 N/A N/A N/A N/A 0.173±0.05 0.033±0.01 N/A N/A 0.004±0.00 0.078±0.00 0.015±0.00 0.682±0.09 0.010±0.00 N/A
ENSMUST00000133933 N/A N/A N/A N/A N/A 0.113±0.00 0.048±0.00 N/A N/A N/A N/A 2.591±0.00 N/A N/A
ENSMUST00000137947 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A
ENSMUST00000138348 N/A 0.121±0.00 N/A N/A N/A 0.071±0.00 0.134±0.00 0.184±0.00 0.029±0.00 N/A N/A N/A 0.028±0.00 N/A
ENSMUSG00000085150 ENSMUST00000129158 N/A N/A 0.009±0.00 0.019±0.01 N/A N/A N/A N/A N/A N/A N/A 0.436±0.00 N/A N/A
ENSMUSG00000087363 ENSMUST00000131707 0.264±0.17 N/A N/A 0.058±0.00 0.131±0.04 N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A 7.464±2.76
ENSMUST00000149000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087892 ENSMUST00000157267 N/A N/A N/A 9.429±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.528±0.00
ENSMUSG00000090334 ENSMUST00000164712 0.298±0.15 N/A 0.091±0.01 0.294±0.06 1.191±0.85 N/A 0.245±0.09 0.264±0.10 0.106±0.04 0.464±0.15 N/A 0.886±0.55 0.338±0.28 0.189±0.00

Loading