C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mucosal vascular addressin cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346144 MADCAM1-001 ENSG00000099866 9606 + 19:496454-505340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalKidneyLiverLungOvaryPlacentaENST00000346144
Transcript ID Adrenal Kidney Liver Lung Ovary Placenta
ENST00000346144 0.303±0.00 0.105±0.00 0.219±0.00 0.528±0.00 0.081±0.00 0.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EJ CIL_0007EJ_0001 CGP 19:463346-505343
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00043J CIL_00043J_0001 CGP 19:489176-519654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006955 TAS immune response
GO:0007155 TAS:IEA cell adhesion
GO:0007160 IDA cell-matrix adhesion
GO:0007165 TAS signal transduction
GO:0007229 IDA integrin-mediated signaling pathway
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030198 TAS extracellular matrix organization
GO:0034113 IMP heterotypic cell-cell adhesion
GO:0043113 IDA receptor clustering
GO:0050776 TAS regulation of immune response
GO:0050901 IDA leukocyte tethering or rolling
GO:0098640 IDA integrin binding involved in cell-matrix adhesion

Homologs

No Homologs available.

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