C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347616 CNTN1-201 ENSG00000018236 9606 + 12:40908354-41072406 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000347616
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000347616 1.271±0.00 35.806±3.02 0.326±0.06 0.528±0.00 0.638±0.59 0.038±0.00 1.160±0.08 2.179±1.80 0.037±0.03 3.461±2.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 TAS Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0016020 TAS membrane
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169825 Cntn1-201 protein_coding Mus_musculus 0 3788
ENSMUST00000000109 Cntn1-001 protein_coding Mus_musculus 0 3788
ENSMUST00000068378 Cntn1-002 protein_coding Mus_musculus 0 3746
ENSMUST00000141187 Cntn1-003 retained_intron Mus_musculus 0 1046

Loading