C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calmodulin binding transcription activator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348066 CAMTA2-001 ENSG00000108509 9606 - 17:4967998-4987652 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENST00000348066
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENST00000348066 16.491±0.00 0.249±0.00 2.619±0.00 2.044±0.00 2.162±0.00 0.263±0.00 11.293±0.00 4.455±0.00 3.254±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004WD CIL_0004WD_0001 CGP 17:4959226-4987652
CIL_00006G CIL_00006G_0001 CGP 17:4967992-4997610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IGI transcription factor binding
GO:0014898 IDA cardiac muscle hypertrophy in response to stress
GO:0042826 IDA histone deacetylase binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108544 Camta2-005 protein_coding Mus_musculus 0 5234
ENSMUST00000036299 Camta2-004 protein_coding Mus_musculus 0 5166
ENSMUST00000119120 Camta2-007 protein_coding Mus_musculus 0 5099
ENSMUST00000100933 Camta2-006 protein_coding Mus_musculus 0 4844
ENSMUST00000120261 Camta2-009 protein_coding Mus_musculus 0 4407
ENSMUST00000125687 Camta2-001 retained_intron Mus_musculus 0 4394
ENSMUST00000145823 Camta2-003 nonsense_mediated_decay Mus_musculus 0 4394
ENSMUST00000108545 Camta2-008 protein_coding Mus_musculus 0 4272
ENSMUST00000150224 Camta2-002 retained_intron Mus_musculus 0 390

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