C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myocyte enhancer factor 2D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348159 MEF2D-001 ENSG00000116604 9606 - 1:156463727-156500828 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000348159
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000348159 0.391±0.00 5.476±4.86 5.864±0.00 0.397±0.00 5.411±0.00 1.062±0.66 12.526±0.00 10.218±0.00 2.846±0.00 5.239±2.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001649 IEA osteoblast differentiation
GO:0001958 IEA endochondral ossification
GO:0002062 IEA chondrocyte differentiation
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007399 IEA nervous system development
GO:0007512 IEP adult heart development
GO:0007517 TAS muscle organ development
GO:0033613 IPI activating transcription factor binding
GO:0035914 IEA skeletal muscle cell differentiation
GO:0042826 IPI histone deacetylase binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001455 Mef2d-001 protein_coding Mus_musculus 0 2743
ENSMUST00000107559 Mef2d-004 protein_coding Mus_musculus 0 2259
ENSMUST00000119251 Mef2d-002 protein_coding Mus_musculus 0 2189
ENSMUST00000107558 Mef2d-003 protein_coding Mus_musculus 0 1855
ENSMUST00000139153 Mef2d-006 processed_transcript Mus_musculus 0 390
ENSMUST00000152861 Mef2d-007 processed_transcript Mus_musculus 0 307
ENSDART00000044083 mef2cb-201 protein_coding Danio_rerio 0 303
ENSDART00000135911 mef2cb-001 protein_coding Danio_rerio 0 303
ENSMUST00000163888 Mef2c-202 protein_coding Mus_musculus 0 298
ENSMUST00000185052 Mef2c-001 protein_coding Mus_musculus 0 298
ENSMUST00000005722 Mef2c-201 protein_coding Mus_musculus 0 259
ENSMUST00000140927 Mef2d-005 retained_intron Mus_musculus 0 224
ENSMUST00000143349 Caprin1-016 protein_coding Mus_musculus 0.0000006 62

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