C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myocyte enhancer factor 2cb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000044083 mef2cb-201 ENSDARG00000009418 7955 - 5:49966161-50042936 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleENSDART00000044083
Transcript ID Brain Liver Muscle
ENSDART00000044083 4.358±1.15 0.131±0.00 4.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KE CIL_0005KE_0001 CGP 5:49810772-50043000
CIL_0007M9 CIL_0007M9_0004 UCNEbase 5:49916006-50254911

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003143 IMP embryonic heart tube morphogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007507 IGI heart development
GO:0046983 IEA protein dimerization activity
GO:0055007 IGI cardiac muscle cell differentiation
GO:0055013 IGI cardiac muscle cell development
GO:0060914 IGI heart formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005722 Mef2c-201 protein_coding Mus_musculus 0 335
ENSMUST00000163888 Mef2c-202 protein_coding Mus_musculus 0 451
ENSMUST00000185052 Mef2c-001 protein_coding Mus_musculus 0 451
ENST00000340208 MEF2C-005 protein_coding Homo_sapiens 0 431
ENST00000348159 MEF2D-001 protein_coding Homo_sapiens 0 303
ENST00000360595 MEF2D-004 protein_coding Homo_sapiens 0 303
ENST00000368240 MEF2D-201 protein_coding Homo_sapiens 0 303
ENST00000424173 MEF2C-004 protein_coding Homo_sapiens 0 372
ENST00000437473 MEF2C-003 protein_coding Homo_sapiens 0 490
ENST00000464356 MEF2D-005 protein_coding Homo_sapiens 0 254
ENST00000475587 MEF2D-002 nonsense_mediated_decay Homo_sapiens 0 303
ENST00000502831 MEF2C-007 protein_coding Homo_sapiens 0 412
ENST00000502983 MEF2C-010 protein_coding Homo_sapiens 0 481
ENST00000503075 MEF2C-013 protein_coding Homo_sapiens 0 370
ENST00000504921 MEF2C-201 protein_coding Homo_sapiens 0 366
ENST00000506554 MEF2C-025 protein_coding Homo_sapiens 0 490
ENST00000506716 MEF2C-016 protein_coding Homo_sapiens 0 372
ENST00000507984 MEF2C-015 protein_coding Homo_sapiens 0 372
ENST00000508569 MEF2C-022 protein_coding Homo_sapiens 0 490
ENST00000508610 MEF2C-014 protein_coding Homo_sapiens 0 475
ENST00000510942 MEF2C-024 protein_coding Homo_sapiens 0 490
ENST00000511086 MEF2C-018 retained_intron Homo_sapiens 0 366
ENST00000513252 MEF2C-012 protein_coding Homo_sapiens 0 372
ENST00000514015 MEF2C-023 protein_coding Homo_sapiens 0 490
ENST00000514028 MEF2C-001 protein_coding Homo_sapiens 0 490

Loading