C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myocyte enhancer factor 2D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001455 Mef2d-001 ENSMUSG00000001419 10090 + 3:88142372-88172086 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001455 11.453±4.13 22.069±1.08 7.835±4.06 9.722±2.06 17.197±4.67 17.546±3.77 21.365±1.86 6.801±1.78 3.081±1.65 10.662±4.05 26.522±0.00 9.848±6.18 6.330±2.30 1.524±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001649 IGI osteoblast differentiation
GO:0001958 IGI endochondral ossification
GO:0002062 IGI chondrocyte differentiation
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IC nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007512 IEA adult heart development
GO:0033613 IEA activating transcription factor binding
GO:0035914 IMP skeletal muscle cell differentiation
GO:0042826 IEA histone deacetylase binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099134 mef2ca-203 protein_coding Danio_rerio 0 281
ENSDART00000039551 mef2ca-202 protein_coding Danio_rerio 0 281
ENSDART00000027392 mef2ca-201 protein_coding Danio_rerio 0 281
ENSDART00000138962 mef2ca-005 protein_coding Danio_rerio 0 239
ENSDART00000134953 mef2ca-006 protein_coding Danio_rerio 0 239
ENSDART00000134219 mef2ca-004 protein_coding Danio_rerio 0 239
ENST00000340208 MEF2C-005 protein_coding Homo_sapiens 0 292
ENST00000348159 MEF2D-001 protein_coding Homo_sapiens 0 2743
ENST00000360595 MEF2D-004 protein_coding Homo_sapiens 0 2658
ENST00000368240 MEF2D-201 protein_coding Homo_sapiens 0 769
ENST00000424173 MEF2C-004 protein_coding Homo_sapiens 0 254
ENST00000437473 MEF2C-003 protein_coding Homo_sapiens 0 294
ENST00000464356 MEF2D-005 protein_coding Homo_sapiens 0 1989
ENST00000475587 MEF2D-002 nonsense_mediated_decay Homo_sapiens 0 769
ENST00000489057 MEF2D-006 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000493077 MEF2D-007 retained_intron Homo_sapiens 0 619
ENST00000502831 MEF2C-007 protein_coding Homo_sapiens 0 279
ENST00000502983 MEF2C-010 protein_coding Homo_sapiens 0 294
ENST00000503075 MEF2C-013 protein_coding Homo_sapiens 0 254
ENST00000504921 MEF2C-201 protein_coding Homo_sapiens 0 250
ENST00000506554 MEF2C-025 protein_coding Homo_sapiens 0 294
ENST00000506716 MEF2C-016 protein_coding Homo_sapiens 0 254
ENST00000507984 MEF2C-015 protein_coding Homo_sapiens 0 254
ENST00000508569 MEF2C-022 protein_coding Homo_sapiens 0 294
ENST00000508610 MEF2C-014 protein_coding Homo_sapiens 0 294
ENST00000510942 MEF2C-024 protein_coding Homo_sapiens 0 294
ENST00000511086 MEF2C-018 retained_intron Homo_sapiens 0 250
ENST00000513252 MEF2C-012 protein_coding Homo_sapiens 0 254
ENST00000514015 MEF2C-023 protein_coding Homo_sapiens 0 294
ENST00000514028 MEF2C-001 protein_coding Homo_sapiens 0 294

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