C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: contactin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000348761 CNTN1-002 ENSG00000018236 9606 + 12:40908359-41070265 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLungMuscleOvaryENST00000348761
Transcript ID Adipose Adrenal Colon Heart Kidney Lung Muscle Ovary
ENST00000348761 0.087±0.00 0.707±0.00 0.968±0.62 0.079±0.00 0.256±0.00 0.480±0.00 0.042±0.00 1.574±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007219 TAS Notch signaling pathway
GO:0007411 TAS axon guidance
GO:0016020 TAS membrane
GO:0031225 IEA anchored component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169825 Cntn1-201 protein_coding Mus_musculus 0 3410
ENSMUST00000068378 Cntn1-002 protein_coding Mus_musculus 0 3410
ENSMUST00000000109 Cntn1-001 protein_coding Mus_musculus 0 3410
ENSMUST00000141187 Cntn1-003 retained_intron Mus_musculus 0 979

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