C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: T-box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349155 TBX3-001 ENSG00000135111 9606 - 12:114670254-114684164 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000349155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000349155 9.186±0.00 3.279±0.00 0.821±0.00 0.308±0.10 3.617±2.70 4.261±0.00 1.748±1.17 4.668±2.13 4.627±1.79 8.492±5.42 3.447±0.00 6.226±4.92 13.077±0.25 2.638±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095S CIL_00095S_0001 VISTA 12:114119731-114721669
CIL_00092A CIL_00092A_0001 VISTA 12:114147407-114748589
CIL_0008K6 CIL_0008K6_0001 VISTA 12:114385728-114986369
CIL_0008K7 CIL_0008K7_0001 VISTA 12:114386589-114987495

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001085 ISS RNA polymerase II transcription factor binding
GO:0001102 ISS RNA polymerase II activating transcription factor binding
GO:0001501 IMP skeletal system development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007569 IDA cell aging
GO:0008284 IDA positive regulation of cell proliferation
GO:0008595 IMP anterior/posterior axis specification, embryo
GO:0009887 IDA organ morphogenesis
GO:0030539 IMP male genitalia development
GO:0030540 IMP female genitalia development
GO:0030879 IMP mammary gland development
GO:0032275 IMP luteinizing hormone secretion
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035136 IDA forelimb morphogenesis
GO:0042733 IMP embryonic digit morphogenesis
GO:0043066 IDA negative regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045662 IDA negative regulation of myoblast differentiation
GO:0045787 IDA positive regulation of cell cycle
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046884 IMP follicle-stimulating hormone secretion
GO:0048332 IMP mesoderm morphogenesis
GO:0090398 IDA cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079719 Tbx3-201 protein_coding Mus_musculus 0 2303
ENSMUST00000121021 Tbx3-002 protein_coding Mus_musculus 0 2303
ENSMUST00000018748 Tbx3-001 protein_coding Mus_musculus 0 1406
ENSMUST00000018407 Tbx5-201 protein_coding Mus_musculus 0.0000001 64

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