C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000353107 POLR2K-001 ENSG00000147669 9606 + 8:100150584-100154002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353107
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353107 14.913±0.00 23.701±0.00 4.319±0.00 31.071±6.69 18.009±6.98 20.251±13.53 11.793±6.06 18.828±12.62 12.250±0.14 15.769±5.27 6.640±1.34 28.209±10.11 19.311±2.40 26.386±9.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000O CIL_00000O_0001 CGP 8:100133360-100154002
CIL_000533 CIL_000533_0002 CGP 8:100150584-100259278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0005829 TAS cytosol
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006385 TAS transcription elongation from RNA polymerase III promoter
GO:0006386 TAS termination of RNA polymerase III transcription
GO:0008270 TAS zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032481 TAS positive regulation of type I interferon production
GO:0045087 TAS innate immune response
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180159 Polr2k-002 protein_coding Mus_musculus 0 285
ENSMUST00000057177 Polr2k-001 protein_coding Mus_musculus 0 279
ENSMUST00000117155 Gm14567-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000120170 Polr2k-ps-001 processed_pseudogene Mus_musculus 0 226

Loading