C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180159 Polr2k-002 ENSMUSG00000045996 10090 + 15:36174010-36177007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180159
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180159 1.912±0.66 0.639±0.02 37.365±1.39 22.389±16.28 1.305±0.51 0.960±0.50 5.157±1.56 3.153±1.92 26.642±27.86 1.711±1.08 29.247±3.32 25.125±21.53 22.946±11.72 4.965±1.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000O CIL_00000O_0002 CGP 15:36150060-36177010
CIL_000533 CIL_000533_0003 CGP 15:36174010-36235610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006383 IBA transcription from RNA polymerase III promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353107 POLR2K-001 protein_coding Homo_sapiens 0 285
ENST00000519765 POLR2K-003 processed_transcript Homo_sapiens 0 198
ENST00000522439 POLR2K-002 protein_coding Homo_sapiens 0 235

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