C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182428 Atg7-003 ENSMUSG00000030314 10090 + 6:114643129-114859230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverPlacentaTestisENSMUST00000182428
Transcript ID Brain Liver Placenta Testis
ENSMUST00000182428 4.547±0.00 1.689±0.29 4.845±0.00 5.774±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061H CIL_00061H_0002 CGP 6:114397936-114860614
CIL_0005SK CIL_0005SK_0002 CGP 6:114643097-114969994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000407 IBA pre-autophagosomal structure
GO:0000422 IBA mitochondrion degradation
GO:0001889 IMP liver development
GO:0004839 IDA ubiquitin activating enzyme activity
GO:0005515 IPI protein binding
GO:0005829 IBA cytosol
GO:0006497 ISO protein lipidation
GO:0006501 IBA C-terminal protein lipidation
GO:0006520 IMP cellular amino acid metabolic process
GO:0006914 IMP autophagy
GO:0006995 IBA cellular response to nitrogen starvation
GO:0006996 IMP organelle organization
GO:0007005 IMP mitochondrion organization
GO:0007628 IMP adult walking behavior
GO:0009791 IMP post-embryonic development
GO:0016236 IBA macroautophagy
GO:0016567 IDA protein ubiquitination
GO:0019779 IBA Atg8 activating enzyme
GO:0021680 IMP cerebellar Purkinje cell layer development
GO:0021860 IMP pyramidal neuron development
GO:0021955 IMP central nervous system neuron axonogenesis
GO:0021987 IMP cerebral cortex development
GO:0030163 IMP protein catabolic process
GO:0031175 IMP neuron projection development
GO:0031396 IMP regulation of protein ubiquitination
GO:0031401 IDA positive regulation of protein modification process
GO:0032446 IMP protein modification by small protein conjugation
GO:0034727 IBA piecemeal microautophagy of nucleus
GO:0039689 IMP negative stranded viral RNA replication
GO:0042594 IMP response to starvation
GO:0043066 IMP negative regulation of apoptotic process
GO:0044805 IBA late nucleophagy
GO:0050877 IMP neurological system process
GO:0055013 IMP cardiac muscle cell development
GO:0061024 IMP membrane organization
GO:0070257 IMP positive regulation of mucus secretion
GO:2000619 IMP negative regulation of histone H4-K16 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000111987 ATG7-201 protein_coding Danio_rerio 0 496
ENST00000354449 ATG7-001 protein_coding Homo_sapiens 0 2002
ENST00000354956 ATG7-004 protein_coding Homo_sapiens 0 2185
ENST00000418682 ATG7-012 nonsense_mediated_decay Homo_sapiens 0 285
ENST00000419112 ATG7-006 protein_coding Homo_sapiens 0 231
ENST00000423116 ATG7-008 protein_coding Homo_sapiens 0 344
ENST00000424071 ATG7-015 nonsense_mediated_decay Homo_sapiens 0 671
ENST00000434066 ATG7-016 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000444619 ATG7-005 protein_coding Homo_sapiens 0 250
ENST00000446450 ATG7-002 protein_coding Homo_sapiens 0 1522
ENST00000451513 ATG7-009 protein_coding Homo_sapiens 0 479
ENST00000451830 ATG7-010 protein_coding Homo_sapiens 0 387
ENST00000461278 ATG7-025 retained_intron Homo_sapiens 0 337
ENST00000467121 ATG7-026 retained_intron Homo_sapiens 0 368
ENST00000478638 ATG7-017 processed_transcript Homo_sapiens 0 451
ENST00000488924 ATG7-013 processed_transcript Homo_sapiens 0 379

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