C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA-yW synthesizing protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354611 TYW5-001 ENSG00000162971 9606 - 2:199929975-199955736 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyOvaryPlacentaENST00000354611
Transcript ID Kidney Ovary Placenta
ENST00000354611 1.018±0.00 0.804±0.04 0.375±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0001 CGP 2:199911256-199955935
CIL_0000JI CIL_0000JI_0002 CGP 2:199929975-200008540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0005506 IDA iron ion binding
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031591 IDA wybutosine biosynthetic process
GO:0042803 IDA protein homodimerization activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000162686 Tyw5-001 protein_coding Mus_musculus 0 1083
ENSMUST00000079998 Tyw5-004 nonsense_mediated_decay Mus_musculus 0 972
ENSMUST00000097732 Tyw5-002 retained_intron Mus_musculus 0 671
ENSMUST00000160837 Tyw5-007 protein_coding Mus_musculus 0 641
ENSMUST00000161727 Tyw5-010 retained_intron Mus_musculus 0 516
ENSMUST00000163039 Tyw5-009 processed_transcript Mus_musculus 0 484
ENSMUST00000161780 Tyw5-003 protein_coding Mus_musculus 0 453
ENSMUST00000162663 Tyw5-011 processed_transcript Mus_musculus 0 442
ENSMUST00000160118 Tyw5-006 nonsense_mediated_decay Mus_musculus 0 303
ENSMUST00000161092 Tyw5-008 retained_intron Mus_musculus 0 287

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