C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 39 (zinc transporter), member 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354884 SLC39A13-011 ENSG00000165915 9606 + 11:47408631-47416496 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354884 7.167±0.00 12.376±0.00 2.308±0.00 2.512±1.99 1.537±0.00 11.259±0.00 4.072±3.13 32.969±0.00 4.857±0.00 15.259±0.00 3.856±0.00 14.289±7.32 27.791±8.48 25.735±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LM CIL_0002LM_0002 CGP 11:47354860-47416501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005385 IC zinc ion transmembrane transporter activity
GO:0005794 ISS Golgi apparatus
GO:0006882 ISS cellular zinc ion homeostasis
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0030001 IEA metal ion transport
GO:0030173 IC integral component of Golgi membrane
GO:0042803 IPI protein homodimerization activity
GO:0046873 IEA metal ion transmembrane transporter activity
GO:0048471 ISS perinuclear region of cytoplasm
GO:0055085 IEA transmembrane transport
GO:0061448 IMP connective tissue development
GO:0071577 ISS zinc ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073575 Slc39a13-001 protein_coding Mus_musculus 0 1243
ENSMUST00000111436 Slc39a13-012 protein_coding Mus_musculus 0 767
ENSMUST00000123685 Slc39a13-004 processed_transcript Mus_musculus 0 636
ENSMUST00000079976 Slc39a13-002 protein_coding Mus_musculus 0 499
ENSMUST00000153367 Slc39a13-003 protein_coding Mus_musculus 0 470
ENSMUST00000150348 Slc39a13-006 processed_transcript Mus_musculus 0 390
ENSMUST00000149430 Slc39a13-007 processed_transcript Mus_musculus 0 387
ENSMUST00000142943 Slc39a13-011 processed_transcript Mus_musculus 0 385
ENSMUST00000141328 Slc39a13-008 processed_transcript Mus_musculus 0 222
ENSMUST00000130252 Slc39a13-005 processed_transcript Mus_musculus 2e-33 148

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