C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycosylphosphatidylinositol anchor attachment 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355091 GPAA1-001 ENSG00000197858 9606 + 8:144082610-144086216 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355091 19.845±0.00 32.315±0.00 0.887±0.00 17.480±0.00 23.293±20.37 15.349±0.00 11.319±10.25 51.025±0.00 21.504±19.35 16.203±0.00 13.373±12.70 34.209±21.53 44.813±8.12 16.549±5.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_00026Y CIL_00026Y_0001 CGP 8:144078626-144086216
CIL_00026V CIL_00026V_0001 CGP 8:144082590-144097525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003923 NAS GPI-anchor transamidase activity
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006461 NAS protein complex assembly
GO:0006501 TAS C-terminal protein lipidation
GO:0006621 NAS protein retention in ER lumen
GO:0015631 NAS tubulin binding
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016255 TAS attachment of GPI anchor to protein
GO:0034235 IMP GPI anchor binding
GO:0042765 IEA:TAS GPI-anchor transamidase complex
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023221 Gpaa1-001 protein_coding Mus_musculus 0 2006
ENSMUST00000164972 Gpaa1-003 nonsense_mediated_decay Mus_musculus 0 1925
ENSMUST00000172281 Gpaa1-002 protein_coding Mus_musculus 0 1707
ENSMUST00000171005 Gpaa1-007 retained_intron Mus_musculus 0 638
ENSMUST00000164680 Gpaa1-005 retained_intron Mus_musculus 0 562

Loading