C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, mu 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355264 AP3M1-001 ENSG00000185009 9606 - 10:74120255-74151063 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverOvaryPlacentaTestisENST00000355264
Transcript ID Adrenal Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000355264 6.175±0.00 2.847±0.00 5.860±0.00 4.211±2.98 3.928±0.00 5.183±1.26 7.789±1.01 4.855±2.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0001 CGP 10:73995193-74151063
CIL_00092U CIL_00092U_0001 VISTA 10:74118007-74719242
CIL_00016K CIL_00016K_0001 CGP 10:74120255-74709303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005764 TAS lysosome
GO:0005765 IDA lysosomal membrane
GO:0005794 IEA Golgi apparatus
GO:0006622 TAS protein targeting to lysosome
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0008089 ISS anterograde axon cargo transport
GO:0016192 IEA vesicle-mediated transport
GO:0017137 IPI Rab GTPase binding
GO:0030131 IEA clathrin adaptor complex
GO:0031410 IEA cytoplasmic vesicle
GO:0048490 ISS anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154460 Ap3m1-001 protein_coding Mus_musculus 0 2830
ENSMUST00000177652 Ap3m1-ps-201 pseudogene Mus_musculus 0 2706
ENSMUST00000022371 Ap3m1-002 protein_coding Mus_musculus 0 1753
ENSMUST00000130291 Ap3m1-003 protein_coding Mus_musculus 0 789
ENSMUST00000130370 Ap3m1-006 protein_coding Mus_musculus 0 686
ENSMUST00000126536 Ap3m1-005 nonsense_mediated_decay Mus_musculus 0 606
ENSMUST00000156716 Ap3m1-004 processed_transcript Mus_musculus 0 534
ENSMUST00000148886 Ap3m1-007 processed_transcript Mus_musculus 0 414
ENSMUST00000138089 Baz2b-013 processed_transcript Mus_musculus 0.000007 58
ENSMUST00000134908 Baz2b-012 processed_transcript Mus_musculus 0.000007 58
ENSMUST00000151756 Baz2b-011 processed_transcript Mus_musculus 0.000007 58

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