C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00016K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185009-ENSG00000156110 CGP 9606 10:74120255-74709303
GeneTranscriptPositionBiotype
ENSG00000035403 (VCL)
vinculin 		ENST00000211998 (VCL-201) 73998114-74120152 protein_coding
ENST00000372755 (VCL-001) 73998114-74121363 protein_coding
ENST00000436396 (VCL-002) 74083476-74120160 protein_coding
ENST00000461383 (VCL-005) 74043091-74063890 processed_transcript
ENST00000472585 (VCL-004) 74104928-74108975 retained_intron
ENST00000478896 (VCL-003) 73998116-74105293 processed_transcript
ENST00000623461 (VCL-007) 73995193-74120160 processed_transcript
ENST00000624354 (VCL-006) 73998114-74118048 nonsense_mediated_decay
ENSG00000156110 (ADK)
adenosine kinase 		ENST00000286621 (ADK-001) 74151229-74708475 protein_coding
ENST00000372734 (ADK-003) 74176686-74709303 protein_coding
ENST00000467840 (ADK-002) 74525364-74528299 processed_transcript
ENST00000478611 (ADK-004) 74151235-74224593 processed_transcript
ENST00000539909 (ADK-201) 74151185-74709299 protein_coding
ENST00000541550 (ADK-202) 74176489-74709299 protein_coding
ENSG00000185009 (AP3M1)
adaptor-related protein complex 3, mu 1 subunit 		ENST00000355264 (AP3M1-001) 74120255-74151063 protein_coding
ENST00000372745 (AP3M1-002) 74122964-74150842 protein_coding
ENST00000480373 (AP3M1-003) 74128878-74130004 processed_transcript
ENST00000487653 (AP3M1-004) 74138256-74150757 processed_transcript
ENSG00000206756 (Y_RNA)
Y RNA 		ENST00000384029 (Y_RNA.1-620) 74551392-74551493 misc_RNA
ENSG00000213731 (RAB5CP1)
RAB5C, member RAS oncogene family pseudogene 1 		ENST00000395972 (RAB5CP1-001) 74423435-74424014 processed_pseudogene
ENSG00000214626 (POLR3DP1)
polymerase (RNA) III (DNA directed) polypeptide D, 44kDa pseudogene 1 		ENST00000398689 (POLR3DP1-001) 74654956-74656131 processed_pseudogene
ENSG00000214629 (RPSAP6)
ribosomal protein SA pseudogene 6 		ENST00000417882 (RPSAP6-001) 74371535-74372416 processed_pseudogene
ENSG00000236900 (TIMM9P1)
translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 1 		ENST00000436122 (TIMM9P1-001) 74344550-74344805 processed_pseudogene
ENSG00000271710 (RP11-312P12.3)
 ENST00000605525 (RP11-312P12.3-001) 74641410-74641776 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_00016K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021824-ENSMUSG00000039197 CGP 10090 14:21031442-21448568
GeneTranscriptPositionBiotype
ENSMUSG00000021823 (Vcl)
vinculin 		ENSMUST00000022369 (Vcl-201) 20929433-21033673 protein_coding
ENSMUSG00000039197 (Adk)
adenosine kinase 		ENSMUST00000045376 (Adk-201) 21052574-21448568 protein_coding
ENSMUSG00000088456 (Gm26372)
predicted gene, 26372 		ENSMUST00000157831 (Gm26372-201) 21263624-21263859 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016K_0001ENSG00000035403ENST00000211998ENST00000372755ENST00000436396ENST00000461383ENST00000472585ENST00000478896ENST00000623461ENST00000624354ENSG00000156110ENST00000286621ENST00000372734ENST00000467840ENST00000478611ENST00000539909ENST00000541550ENSG00000185009ENST00000355264ENST00000372745ENST00000480373ENST00000487653ENSG00000206756ENST00000384029ENSG00000213731ENST00000395972ENSG00000214626ENST00000398689ENSG00000214629ENST00000417882ENSG00000236900ENST00000436122ENSG00000271710ENST00000605525CIL_00016K_0002ENSMUSG00000021823ENSMUST00000022369ENSMUSG00000039197ENSMUST00000045376ENSMUSG00000088456ENSMUST00000157831
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00016K_0001ENSG00000035403ENST00000211998ENST00000372755ENST00000436396ENST00000623461ENST00000624354ENSG00000156110ENST00000286621ENST00000372734ENST00000541550ENSG00000185009ENST00000355264ENST00000372745ENSG00000206756ENST00000384029ENSG00000213731ENST00000395972ENSG00000214626ENST00000398689ENSG00000214629ENST00000417882ENSG00000236900ENST00000436122ENSG00000271710ENST00000605525CIL_00016K_0002ENSMUSG00000021823ENSMUST00000022369ENSMUSG00000039197ENSMUST00000045376ENSMUSG00000088456ENSMUST00000157831
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000035403 ENST00000211998 11.847±0.00 25.631±0.00 5.637±0.00 2.471±0.49 16.574±2.72 27.452±7.77 24.882±17.84 11.499±10.52 21.509±18.82 23.938±15.54 16.738±4.53 9.396±5.20 10.674±1.86 18.906±10.21
ENST00000372755 N/A N/A N/A N/A N/A N/A N/A 1.349±0.00 N/A N/A N/A N/A N/A N/A
ENST00000436396 11.619±0.00 19.322±0.00 N/A 2.619±0.00 10.983±0.00 26.804±0.00 19.428±0.00 14.425±0.00 3.914±0.00 24.698±0.00 6.468±0.00 8.125±0.02 N/A 13.618±0.00
ENST00000461383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623461 N/A N/A 2.331±0.00 0.601±0.00 3.652±0.00 N/A 2.157±0.00 N/A N/A 3.462±0.00 N/A 2.545±0.00 N/A N/A
ENST00000624354 N/A N/A 3.948±0.00 N/A 11.050±0.00 7.930±0.00 N/A 1.288±0.00 N/A N/A N/A 8.711±2.01 24.507±0.00 4.453±0.00
ENSG00000156110 ENST00000286621 5.059±0.00 8.015±0.00 7.124±0.00 11.637±2.08 9.599±2.99 8.594±2.69 8.108±2.33 27.585±17.91 12.434±7.85 10.859±3.55 5.055±1.34 8.348±2.41 9.497±1.02 6.033±0.06
ENST00000372734 N/A N/A 1.094±0.00 1.296±0.00 2.905±0.00 1.272±0.00 N/A 5.942±3.37 5.707±3.83 N/A 1.058±0.00 1.257±0.70 3.893±1.32 1.665±0.57
ENST00000467840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541550 0.981±0.00 1.172±0.00 N/A N/A 1.516±0.00 N/A 0.689±0.00 N/A N/A 2.490±0.00 N/A 0.599±0.00 N/A N/A
ENSG00000185009 ENST00000355264 N/A 6.175±0.00 N/A 2.847±0.00 5.860±0.00 N/A N/A 4.211±2.98 3.928±0.00 N/A N/A 5.183±1.26 7.789±1.01 4.855±2.25
ENST00000372745 N/A N/A N/A 2.141±0.33 N/A N/A N/A 5.637±0.00 N/A N/A N/A 8.396±0.02 N/A 6.009±0.00
ENST00000480373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206756 ENST00000384029 N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213731 ENST00000395972 N/A 0.115±0.00 N/A 0.062±0.00 N/A 0.504±0.48 N/A 0.473±0.32 0.051±0.00 0.190±0.00 0.188±0.06 0.331±0.03 N/A 0.148±0.00
ENSG00000214626 ENST00000398689 N/A 0.031±0.00 0.282±0.00 0.076±0.00 0.116±0.00 0.180±0.00 0.027±0.01 0.281±0.00 0.047±0.03 0.261±0.00 N/A 0.077±0.05 0.039±0.01 0.101±0.00
ENSG00000214629 ENST00000417882 0.018±0.00 0.152±0.00 0.074±0.00 0.236±0.19 0.193±0.17 0.409±0.37 0.017±0.00 0.118±0.10 0.091±0.06 0.046±0.01 N/A 0.123±0.10 0.045±0.00 0.052±0.00
ENSG00000236900 ENST00000436122 N/A N/A N/A N/A N/A N/A N/A N/A 0.631±0.38 3.212±0.00 N/A 2.728±0.00 N/A N/A
ENSG00000271710 ENST00000605525 N/A 0.029±0.00 N/A 0.056±0.00 N/A 0.595±0.00 0.026±0.00 1.760±0.00 0.544±0.00 3.515±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021823 ENSMUST00000022369 22.898±8.64 19.583±4.44 24.638±0.00 5.245±0.97 17.113±6.52 16.329±9.20 11.788±3.85 8.523±2.34 5.265±1.90 37.721±18.48 3.277±0.79 39.333±10.14 26.924±22.61 6.172±2.46
ENSMUSG00000039197 ENSMUST00000045376 25.890±7.72 13.047±3.96 24.551±2.40 13.084±5.65 15.034±8.23 31.695±7.93 43.075±6.33 39.391±7.98 106.950±51.86 27.683±3.48 25.509±3.07 19.271±4.56 17.151±14.04 7.369±1.68
ENSMUSG00000088456 ENSMUST00000157831 0.886±0.00 0.752±0.00 0.925±0.60 0.317±0.00 2.217±2.02 1.939±0.78 0.521±0.00 1.854±0.59 2.222±1.32 1.150±0.19 N/A 0.740±0.00 1.028±0.25 0.518±0.00

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