C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, mu 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154460 Ap3m1-001 ENSMUSG00000021824 10090 - 14:21031442-21052450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000154460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000154460 24.840±7.16 15.804±1.96 47.518±3.84 13.743±0.59 15.402±4.13 19.776±3.36 11.367±2.63 9.580±3.29 14.421±1.09 28.585±10.55 5.120±1.91 21.082±9.36 27.220±2.25 9.148±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008T CIL_00008T_0002 CGP 14:20929433-21052508
CIL_00092U CIL_00092U_0002 VISTA 14:20952002-21553228
CIL_00016K CIL_00016K_0002 CGP 14:21031442-21448568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005765 IEA lysosomal membrane
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0008089 IMP anterograde axon cargo transport
GO:0016192 IEA vesicle-mediated transport
GO:0017137 IEA Rab GTPase binding
GO:0030131 IEA clathrin adaptor complex
GO:0031410 IEA cytoplasmic vesicle
GO:0048490 IMP anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039828 vcla-201 protein_coding Danio_rerio 3e-36 159
ENSDART00000110304 vcla-202 protein_coding Danio_rerio 3e-36 159
ENSDART00000124167 vcla-001 protein_coding Danio_rerio 3e-36 159
ENST00000211998 VCL-201 protein_coding Homo_sapiens 0 285
ENST00000355264 AP3M1-001 protein_coding Homo_sapiens 0 2830
ENST00000372745 AP3M1-002 protein_coding Homo_sapiens 0 2691
ENST00000372755 VCL-001 protein_coding Homo_sapiens 0 285
ENST00000436396 VCL-002 protein_coding Homo_sapiens 0 285
ENST00000480373 AP3M1-003 processed_transcript Homo_sapiens 0 320
ENST00000487653 AP3M1-004 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000623461 VCL-007 processed_transcript Homo_sapiens 0 285

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