C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355295 TDRD7-001 ENSG00000196116 9606 + 9:97411950-97496125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355295
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355295 2.304±0.00 2.427±0.00 0.633±0.00 1.980±1.58 2.202±0.33 4.398±0.40 1.190±0.80 3.252±0.00 0.938±0.15 2.548±0.96 2.219±0.00 3.296±0.68 3.010±0.75 25.095±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JB CIL_0002JB_0001 CGP 9:97307304-97496125
CIL_0007HJ CIL_0007HJ_0002 CGP 9:97411950-97601748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005759 IEA mitochondrial matrix
GO:0007281 IEA germ cell development
GO:0007283 ISS spermatogenesis
GO:0010608 IMP posttranscriptional regulation of gene expression
GO:0030529 IEA ribonucleoprotein complex
GO:0033391 ISS chromatoid body
GO:0035770 IDA ribonucleoprotein granule
GO:0043186 IEA P granule
GO:0047485 IEA protein N-terminus binding
GO:0070306 IMP lens fiber cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102929 Tdrd7-002 protein_coding Mus_musculus 0 2809
ENSMUST00000107777 Tdrd7-001 protein_coding Mus_musculus 0 2809
ENSMUST00000155936 Tdrd7-005 processed_transcript Mus_musculus 0 460

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