C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355768 PER2-002 ENSG00000132326 9606 - 2:238261810-238277936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLungOvaryENST00000355768
Transcript ID Bladder Breast Colon Heart Lung Ovary
ENST00000355768 0.841±0.00 1.880±0.00 2.909±0.00 1.038±0.00 2.279±0.00 4.325±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KS CIL_0004KS_0002 CGP 2:238238267-238290102
CIL_0003NE CIL_0003NE_0001 CGP 2:238244038-238400900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000976 ISS transcription regulatory region sequence-specific DNA binding
GO:0000989 ISS transcription factor binding transcription factor activity
GO:0002931 ISS response to ischemia
GO:0003713 ISS transcription coactivator activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005978 ISS glycogen biosynthetic process
GO:0006094 ISS gluconeogenesis
GO:0006351 IEA transcription, DNA-templated
GO:0006631 ISS fatty acid metabolic process
GO:0007165 IEA signal transduction
GO:0007623 TAS circadian rhythm
GO:0019229 ISS regulation of vasoconstriction
GO:0019249 ISS lactate biosynthetic process
GO:0031397 ISS negative regulation of protein ubiquitination
GO:0032922 ISS circadian regulation of gene expression
GO:0042752 ISS regulation of circadian rhythm
GO:0042754 ISS negative regulation of circadian rhythm
GO:0043130 ISS ubiquitin binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0050767 ISS regulation of neurogenesis
GO:0050796 ISS regulation of insulin secretion
GO:0050872 ISS white fat cell differentiation
GO:0051726 ISS regulation of cell cycle
GO:0051946 ISS regulation of glutamate uptake involved in transmission of nerve impulse
GO:0070345 ISS negative regulation of fat cell proliferation
GO:0070932 ISS histone H3 deacetylation
GO:0097167 ISS circadian regulation of translation
GO:2000678 ISS negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069620 Per2-001 protein_coding Mus_musculus 0 913
ENSMUST00000185298 Per2-002 processed_transcript Mus_musculus 0 215
ENSDART00000024304 per3-001 protein_coding Danio_rerio 8e-20 102

Loading