C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: period circadian clock 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069620 Per2-001 ENSMUSG00000055866 10090 - 1:91415982-91459324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069620
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069620 4.197±0.75 13.293±2.12 16.050±0.17 3.236±0.19 3.533±1.06 5.670±2.13 1.852±0.76 1.933±0.57 2.306±1.25 6.049±4.84 2.578±1.57 5.975±2.58 1.582±1.24 1.105±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0004KS CIL_0004KS_0003 CGP 1:91411483-91459324
CIL_0003NE CIL_0003NE_0002 CGP 1:91415982-91529307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000976 IDA transcription regulatory region sequence-specific DNA binding
GO:0000989 IEA transcription factor binding transcription factor activity
GO:0001047 IDA core promoter binding
GO:0001222 IPI transcription corepressor binding
GO:0002931 IMP response to ischemia
GO:0003713 IDA transcription coactivator activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005978 IMP glycogen biosynthetic process
GO:0006094 IMP gluconeogenesis
GO:0006351 IEA transcription, DNA-templated
GO:0006631 IMP fatty acid metabolic process
GO:0007165 IEA signal transduction
GO:0007623 IEP circadian rhythm
GO:0008134 IPI transcription factor binding
GO:0019229 IMP regulation of vasoconstriction
GO:0019249 IMP lactate biosynthetic process
GO:0019900 IPI kinase binding
GO:0031397 IDA negative regulation of protein ubiquitination
GO:0032922 IMP circadian regulation of gene expression
GO:0035257 IPI nuclear hormone receptor binding
GO:0036002 IDA pre-mRNA binding
GO:0042752 IMP regulation of circadian rhythm
GO:0042754 IDA negative regulation of circadian rhythm
GO:0042826 IPI histone deacetylase binding
GO:0043130 IDA ubiquitin binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050767 IMP regulation of neurogenesis
GO:0050796 IMP regulation of insulin secretion
GO:0050872 IMP white fat cell differentiation
GO:0051726 IMP regulation of cell cycle
GO:0051946 IMP regulation of glutamate uptake involved in transmission of nerve impulse
GO:0060567 IDA negative regulation of DNA-templated transcription, termination
GO:0070063 IPI RNA polymerase binding
GO:0070345 IMP negative regulation of fat cell proliferation
GO:0070932 IMP histone H3 deacetylation
GO:0097167 IMP circadian regulation of translation
GO:1990226 IPI histone methyltransferase binding
GO:2000678 IMP negative regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098004 per2-202 protein_coding Danio_rerio 0.0000000000001 84
ENSDART00000039735 per2-201 protein_coding Danio_rerio 0.0000000000001 84
ENSDART00000148788 per2-001 protein_coding Danio_rerio 0.0000000000001 84
ENST00000254657 PER2-001 protein_coding Homo_sapiens 0 2680
ENST00000355768 PER2-002 protein_coding Homo_sapiens 0 913
ENST00000491417 PER2-005 retained_intron Homo_sapiens 0 337

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