C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0003NE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132326-ENSG00000204104 CGP 9606 2:238244038-238400900
GeneTranscriptPositionBiotype
ENSG00000132326 (PER2)
period circadian clock 2
ENST00000254657 (PER2-001) 238244038-238288609 protein_coding
ENST00000355768 (PER2-002) 238261810-238277936 protein_coding
ENST00000431832 (PER2-004) 238275863-238290102 protein_coding
ENST00000491417 (PER2-005) 238261441-238262975 retained_intron
ENSG00000204104 (TRAF3IP1)
TNF receptor-associated factor 3 interacting protein 1
ENST00000373327 (TRAF3IP1-001) 238320441-238400900 protein_coding
ENST00000391993 (TRAF3IP1-002) 238320441-238400822 protein_coding
ENST00000409739 (TRAF3IP1-003) 238320536-238329342 nonsense_mediated_decay
ENST00000462122 (TRAF3IP1-004) 238347183-238397680 retained_intron
ENST00000483951 (TRAF3IP1-005) 238397422-238398971 retained_intron
ENSG00000232306 (AC012485.2)
ENST00000437372 (AC012485.2-001) 238298710-238300620 antisense
CIL_0003NE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055866-ENSMUSG00000034292 CGP 10090 1:91415982-91529307
GeneTranscriptPositionBiotype
ENSMUSG00000034292 (Traf3ip1)
TRAF3 interacting protein 1
ENSMUST00000047242 (Traf3ip1-001) 91494694-91529307 protein_coding
ENSMUST00000187588 (Traf3ip1-002) 91518262-91529307 retained_intron
ENSMUST00000189341 (Traf3ip1-003) 91494647-91527956 protein_coding
ENSMUSG00000055866 (Per2)
period circadian clock 2
ENSMUST00000069620 (Per2-001) 91415982-91459324 protein_coding
ENSMUST00000185298 (Per2-002) 91447722-91449865 processed_transcript
ENSMUSG00000100151 (RP23-29D20.2)
predicted gene 28382
ENSMUST00000187902 (RP23-29D20.2-001) 91483024-91484774 lincRNA
ENSMUSG00000101958 (RP23-29D20.3)
predicted gene, 19085
ENSMUST00000188924 (RP23-29D20.3-001) 91487729-91490009 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NE_0001ENSG00000132326ENST00000254657ENST00000355768ENST00000431832ENST00000491417ENSG00000204104ENST00000373327ENST00000391993ENST00000409739ENST00000462122ENST00000483951ENSG00000232306ENST00000437372CIL_0003NE_0002ENSMUSG00000034292ENSMUST00000047242ENSMUST00000187588ENSMUST00000189341ENSMUSG00000055866ENSMUST00000069620ENSMUST00000185298ENSMUSG00000100151ENSMUST00000187902ENSMUSG00000101958ENSMUST00000188924
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NE_0001ENSG00000132326ENST00000254657ENST00000355768ENSG00000204104ENST00000373327ENST00000391993ENST00000409739ENST00000462122ENST00000483951ENSG00000232306ENST00000437372CIL_0003NE_0002ENSMUSG00000034292ENSMUST00000047242ENSMUST00000187588ENSMUST00000189341ENSMUSG00000055866ENSMUST00000069620ENSMUST00000185298ENSMUSG00000100151ENSMUST00000187902ENSMUSG00000101958ENSMUST00000188924
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132326 ENST00000254657 2.109±0.00 3.343±0.00 0.506±0.00 1.244±0.18 4.759±2.59 1.847±0.00 2.197±0.00 2.077±0.26 1.210±0.00 4.994±0.00 2.618±1.56 3.279±1.66 1.144±0.04 5.746±0.73
ENST00000355768 N/A N/A 0.841±0.00 N/A 1.880±0.00 2.909±0.00 1.038±0.00 N/A N/A 2.279±0.00 N/A 4.325±0.00 N/A N/A
ENST00000431832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204104 ENST00000373327 N/A N/A N/A N/A N/A N/A 0.383±0.00 N/A 0.317±0.00 N/A N/A N/A 0.206±0.00 5.286±1.02
ENST00000391993 4.481±0.00 3.008±0.00 0.224±0.00 2.600±1.89 4.207±0.00 1.471±1.06 0.956±0.88 2.179±1.96 1.000±0.07 2.031±1.41 2.327±2.08 5.511±1.24 2.465±1.20 7.519±3.32
ENST00000409739 5.664±0.00 3.922±0.00 0.829±0.00 11.859±0.00 3.587±3.05 3.376±2.94 2.463±0.00 N/A N/A 5.825±0.00 N/A 8.415±0.00 1.126±0.00 15.898±5.79
ENST00000462122 N/A N/A 0.746±0.00 2.188±0.00 N/A 1.161±0.00 N/A 0.582±0.00 1.404±0.00 N/A N/A 8.900±7.49 8.171±0.00 67.191±0.00
ENST00000483951 N/A N/A N/A N/A N/A 3.096±0.00 N/A N/A N/A N/A N/A 2.675±0.00 N/A N/A
ENSG00000232306 ENST00000437372 N/A N/A N/A N/A N/A N/A N/A 0.270±0.03 N/A 0.262±0.00 N/A 0.209±0.13 N/A 0.216±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034292 ENSMUST00000047242 0.797±0.33 0.805±0.22 3.067±0.05 2.803±1.30 0.458±0.05 N/A 0.957±0.25 0.809±0.23 1.855±1.00 2.121±0.65 1.350±0.40 4.430±2.54 1.426±0.30 2.062±0.01
ENSMUST00000187588 1.535±0.39 N/A 2.419±1.40 3.711±2.42 1.206±0.00 2.113±0.88 N/A 2.144±1.16 0.818±0.24 4.283±1.76 0.311±0.05 3.946±1.20 0.643±0.19 5.879±0.83
ENSMUST00000189341 0.973±0.03 1.119±0.26 0.886±0.00 3.231±0.00 N/A 1.132±0.29 1.036±0.00 2.239±0.00 0.887±0.41 N/A 0.669±0.00 4.415±1.91 1.000±0.71 30.778±40.14
ENSMUSG00000055866 ENSMUST00000069620 4.197±0.75 13.293±2.12 16.050±0.17 3.236±0.19 3.533±1.06 5.670±2.13 1.852±0.76 1.933±0.57 2.306±1.25 6.049±4.84 2.578±1.57 5.975±2.58 1.582±1.24 1.105±0.43
ENSMUST00000185298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.762±0.00
ENSMUSG00000100151 ENSMUST00000187902 0.116±0.01 10.139±6.53 N/A 0.030±0.00 0.089±0.03 0.690±0.68 0.020±0.00 0.038±0.01 0.013±0.01 0.058±0.03 N/A 0.633±0.36 0.026±0.00 0.063±0.04
ENSMUSG00000101958 ENSMUST00000188924 0.039±0.01 0.455±0.14 0.004±0.00 0.056±0.05 0.080±0.02 N/A N/A N/A 0.005±0.00 0.042±0.00 N/A N/A N/A 0.043±0.02

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