C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAR-related orphan receptor C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356728 RORC-002 ENSG00000143365 9606 - 1:151806071-151826091 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356728 0.120±0.00 0.548±0.00 2.205±0.00 0.089±0.04 1.977±1.50 1.980±0.18 1.656±0.99 15.552±2.46 10.409±10.07 3.507±0.55 26.050±18.14 1.075±0.51 0.094±0.04 4.621±0.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003700 ISS:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006805 ISS xenobiotic metabolic process
GO:0008142 IDA oxysterol binding
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0010906 ISS regulation of glucose metabolic process
GO:0019218 ISS regulation of steroid metabolic process
GO:0030522 IEA intracellular receptor signaling pathway
GO:0032922 ISS circadian regulation of gene expression
GO:0036315 IDA cellular response to sterol
GO:0042093 ISS T-helper cell differentiation
GO:0042753 ISS positive regulation of circadian rhythm
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045598 ISS regulation of fat cell differentiation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0048535 ISS lymph node development
GO:0048541 ISS Peyer's patch development
GO:0060612 ISS adipose tissue development
GO:0060850 ISS regulation of transcription involved in cell fate commitment
GO:0070244 ISS negative regulation of thymocyte apoptotic process
GO:0072539 ISS T-helper 17 cell differentiation
GO:0098531 IDA direct ligand regulated sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029795 Rorc-001 protein_coding Mus_musculus 0 1674
ENSMUST00000169040 Ppard-005 protein_coding Mus_musculus 0.000000002 69
ENSMUST00000142226 Ppard-003 retained_intron Mus_musculus 0.000000002 69
ENSMUST00000166744 Ppard-004 processed_transcript Mus_musculus 0.000000002 69
ENSMUST00000002320 Ppard-001 protein_coding Mus_musculus 0.000000002 69

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