C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scribbled planar cell polarity protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356994 SCRIB-002 ENSG00000180900 9606 - 8:143790920-143815379 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverMusclePlacentaTestisENST00000356994
Transcript ID Brain Breast Heart Kidney Liver Muscle Placenta Testis
ENST00000356994 2.432±1.76 2.057±0.00 1.147±0.00 2.067±0.00 0.954±0.00 9.403±7.32 2.204±0.00 2.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0001 VISTA 8:143231340-143832399
CIL_0002GT CIL_0002GT_0001 CGP 8:143790920-143829859

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001921 IMP positive regulation of receptor recycling
GO:0002093 IEA auditory receptor cell morphogenesis
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0005913 IDA cell-cell adherens junction
GO:0008105 IEA asymmetric protein localization
GO:0008283 IDA cell proliferation
GO:0016032 IEA viral process
GO:0016080 IEA synaptic vesicle targeting
GO:0016323 IEA basolateral plasma membrane
GO:0016331 IEA morphogenesis of embryonic epithelium
GO:0016337 IGI single organismal cell-cell adhesion
GO:0016477 IMP cell migration
GO:0021747 IEA cochlear nucleus development
GO:0031252 IDA cell leading edge
GO:0032863 IMP activation of Rac GTPase activity
GO:0034750 IDA Scrib-APC-beta-catenin complex
GO:0035089 IMP establishment of apical/basal cell polarity
GO:0035748 IEA myelin sheath abaxonal region
GO:0042060 IEA wound healing
GO:0042734 IDA presynaptic membrane
GO:0042995 IEA cell projection
GO:0043065 IMP positive regulation of apoptotic process
GO:0043615 IEA astrocyte cell migration
GO:0045211 IDA postsynaptic membrane
GO:0045930 IDA negative regulation of mitotic cell cycle
GO:0048488 IEA synaptic vesicle endocytosis
GO:0050918 IMP positive chemotaxis
GO:0060088 IEA auditory receptor cell stereocilium organization
GO:0060561 IMP apoptotic process involved in morphogenesis
GO:0060603 ISS mammary gland duct morphogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0071896 IMP protein localization to adherens junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109946 Scrib-002 protein_coding Mus_musculus 0 2700
ENSMUST00000063747 Scrib-003 protein_coding Mus_musculus 0 2174
ENSMUST00000002603 Scrib-001 protein_coding Mus_musculus 0 1923
ENSMUST00000136390 Scrib-004 protein_coding Mus_musculus 0 1502

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