C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scribbled homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002603 Scrib-001 ENSMUSG00000022568 10090 - 15:76047158-76069754 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleTestisENSMUST00000002603
Transcript ID Brain Heart Muscle Testis
ENSMUST00000002603 7.646±2.35 1.408±0.21 1.312±0.65 6.682±1.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C2 CIL_0008C2_0002 VISTA 15:75534812-76135772
CIL_0002GT CIL_0002GT_0002 CGP 15:76047158-76080946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001921 IEA positive regulation of receptor recycling
GO:0002093 IGI auditory receptor cell morphogenesis
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 ISS plasma membrane
GO:0005911 ISS cell-cell junction
GO:0005913 ISS cell-cell adherens junction
GO:0008105 IMP asymmetric protein localization
GO:0008283 ISS cell proliferation
GO:0016080 IMP synaptic vesicle targeting
GO:0016323 IDA basolateral plasma membrane
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0016337 ISS single organismal cell-cell adhesion
GO:0016477 IMP cell migration
GO:0021747 IGI cochlear nucleus development
GO:0031252 ISS cell leading edge
GO:0032863 ISS activation of Rac GTPase activity
GO:0034750 IEA Scrib-APC-beta-catenin complex
GO:0035089 ISS establishment of apical/basal cell polarity
GO:0035748 IDA myelin sheath abaxonal region
GO:0042060 IGI wound healing
GO:0042734 ISS presynaptic membrane
GO:0042995 IEA cell projection
GO:0043065 ISS positive regulation of apoptotic process
GO:0043615 IEA astrocyte cell migration
GO:0045211 ISS postsynaptic membrane
GO:0045930 ISS negative regulation of mitotic cell cycle
GO:0048488 IMP synaptic vesicle endocytosis
GO:0050918 IMP positive chemotaxis
GO:0060088 IGI auditory receptor cell stereocilium organization
GO:0060561 ISS apoptotic process involved in morphogenesis
GO:0060603 IMP mammary gland duct morphogenesis
GO:0070062 IEA extracellular vesicular exosome
GO:0071896 IEA protein localization to adherens junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320476 SCRIB-001 protein_coding Homo_sapiens 0 1923
ENST00000356994 SCRIB-002 protein_coding Homo_sapiens 0 1923
ENST00000377533 SCRIB-003 protein_coding Homo_sapiens 0 1712
ENST00000525051 SCRIB-005 retained_intron Homo_sapiens 0 412
ENST00000526832 SCRIB-004 protein_coding Homo_sapiens 0 848
ENST00000531163 SCRIB-008 retained_intron Homo_sapiens 0 418
ENST00000611528 SCRIB-201 protein_coding Homo_sapiens 0 1712
ENST00000612204 SCRIB-202 protein_coding Homo_sapiens 0 1923
ENST00000622455 SCRIB-203 protein_coding Homo_sapiens 0 1923

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