C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002GT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180900-ENSG00000179950 CGP 9606 8:143790920-143829859
GeneTranscriptPositionBiotype
ENSG00000179950 (PUF60)
poly-U binding splicing factor 60KDa 		ENST00000313352 (PUF60-004) 143816377-143829039 protein_coding
ENST00000349157 (PUF60-002) 143816377-143829352 protein_coding
ENST00000453551 (PUF60-003) 143816377-143829026 protein_coding
ENST00000456095 (PUF60-005) 143816377-143829303 protein_coding
ENST00000524570 (PUF60-010) 143817042-143823282 processed_transcript
ENST00000526151 (PUF60-016) 143821349-143829315 retained_intron
ENST00000526459 (PUF60-024) 143817578-143829338 protein_coding
ENST00000526683 (PUF60-001) 143816344-143829859 protein_coding
ENST00000527197 (PUF60-006) 143816520-143829320 protein_coding
ENST00000527584 (PUF60-019) 143818373-143824460 retained_intron
ENST00000527744 (PUF60-025) 143817586-143829299 protein_coding
ENST00000528320 (PUF60-018) 143817886-143824399 retained_intron
ENST00000528999 (PUF60-021) 143817979-143819037 processed_transcript
ENST00000529693 (PUF60-022) 143818193-143818963 retained_intron
ENST00000529999 (PUF60-012) 143817950-143829044 protein_coding
ENST00000531897 (PUF60-013) 143817996-143829304 protein_coding
ENST00000531951 (PUF60-014) 143817866-143829028 processed_transcript
ENST00000531995 (PUF60-020) 143820233-143821743 retained_intron
ENST00000532127 (PUF60-015) 143820426-143829319 retained_intron
ENST00000532884 (PUF60-023) 143817080-143818476 protein_coding
ENST00000533162 (PUF60-011) 143818222-143829338 protein_coding
ENST00000533362 (PUF60-017) 143821597-143825140 processed_transcript
ENSG00000180900 (SCRIB)
scribbled planar cell polarity protein 		ENST00000320476 (SCRIB-001) 143790920-143815379 protein_coding
ENST00000356994 (SCRIB-002) 143790920-143815379 protein_coding
ENST00000377533 (SCRIB-003) 143790926-143814968 protein_coding
ENST00000525051 (SCRIB-005) 143790925-143793588 retained_intron
ENST00000526832 (SCRIB-004) 143790925-143804151 protein_coding
ENST00000531163 (SCRIB-008) 143790925-143791542 retained_intron
ENST00000531942 (SCRIB-007) 143805252-143808677 protein_coding
ENST00000546337 (SCRIB-009) 143792609-143794236 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002GT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022568-ENSMUSG00000002524 CGP 10090 15:76047158-76080946
GeneTranscriptPositionBiotype
ENSMUSG00000002524 (Puf60)
poly-U binding splicing factor 60 		ENSMUST00000002599 (Puf60-201) 76070184-76080946 protein_coding
ENSMUST00000100527 (Puf60-202) 76070184-76080946 protein_coding
ENSMUSG00000022568 (Scrib)
scribbled homolog (Drosophila) 		ENSMUST00000002603 (Scrib-001) 76047158-76069754 protein_coding
ENSMUST00000063747 (Scrib-003) 76047158-76069754 protein_coding
ENSMUST00000109946 (Scrib-002) 76047158-76069784 protein_coding
ENSMUST00000136390 (Scrib-004) 76047158-76062719 protein_coding
ENSMUST00000145830 (Scrib-005) 76048940-76050786 protein_coding
ENSMUST00000148211 (Scrib-006) 76049203-76050786 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002GT_0001ENSG00000179950ENST00000313352ENST00000349157ENST00000453551ENST00000456095ENST00000526459ENST00000526683ENST00000527197ENST00000527584ENST00000527744ENST00000531951ENSG00000180900ENST00000320476ENST00000356994ENST00000526832ENST00000531163CIL_0002GT_0002ENSMUSG00000002524ENSMUST00000002599ENSMUST00000100527ENSMUSG00000022568ENSMUST00000002603ENSMUST00000063747ENSMUST00000109946ENSMUST00000136390
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179950 ENST00000313352 N/A N/A 0.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.982±0.00 N/A
ENST00000349157 24.113±0.00 28.093±0.00 N/A 17.248±10.96 12.415±11.04 16.790±15.71 3.927±2.21 15.997±14.83 7.097±4.00 15.067±12.26 14.758±0.00 24.492±15.56 29.063±21.38 40.426±0.00
ENST00000453551 N/A N/A N/A 3.236±0.00 N/A 1.998±0.00 N/A 3.116±0.00 2.649±0.00 N/A N/A 13.345±0.00 N/A N/A
ENST00000456095 20.489±0.00 32.888±0.00 N/A 18.164±15.22 22.708±0.00 9.331±0.00 17.938±0.00 24.742±0.00 16.479±0.00 7.043±5.94 20.404±0.00 17.753±2.65 22.175±16.42 24.492±10.70
ENST00000524570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526459 N/A N/A N/A N/A N/A 2.173±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526683 N/A N/A N/A N/A N/A N/A N/A 6.818±0.00 N/A 0.980±0.00 N/A N/A N/A N/A
ENST00000527197 N/A N/A 1.056±0.00 N/A 2.927±0.00 N/A 3.963±3.02 1.433±0.00 11.774±0.00 12.434±0.00 10.462±3.12 11.577±0.00 N/A 22.284±0.00
ENST00000527584 N/A N/A 1.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527744 N/A N/A N/A N/A 4.512±0.00 N/A N/A 2.704±0.00 N/A N/A N/A N/A N/A N/A
ENST00000528320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531951 N/A N/A N/A N/A 2.307±0.00 N/A 0.807±0.00 N/A N/A 2.188±0.00 N/A N/A N/A N/A
ENST00000531995 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533162 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180900 ENST00000320476 8.615±0.00 4.955±0.00 N/A 2.244±1.67 2.910±0.00 4.605±3.05 2.619±0.00 6.907±0.00 2.075±0.30 N/A N/A 16.527±8.62 6.425±1.68 8.202±0.07
ENST00000356994 N/A N/A N/A 2.432±1.76 2.057±0.00 N/A 1.147±0.00 2.067±0.00 0.954±0.00 N/A 9.403±7.32 N/A 2.204±0.00 2.075±0.00
ENST00000377533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526832 N/A 4.030±0.00 N/A N/A 6.386±0.00 6.635±0.00 N/A 5.418±0.00 3.847±0.00 3.894±0.00 N/A 18.183±0.00 5.644±0.43 7.129±0.01
ENST00000531163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.329±0.00 N/A N/A N/A
ENST00000531942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002524 ENSMUST00000002599 45.349±6.81 131.787±11.48 49.945±6.36 60.847±15.57 54.548±24.61 70.438±6.99 19.840±2.47 41.081±3.01 45.797±11.30 56.865±12.35 8.171±3.13 99.096±27.45 60.915±16.01 35.393±13.49
ENSMUST00000100527 21.360±1.57 51.342±5.57 14.589±1.14 39.359±8.33 29.259±2.87 25.625±3.75 15.702±2.29 22.405±1.93 14.452±3.03 28.281±3.02 11.415±2.99 36.566±13.35 28.338±1.13 30.684±13.43
ENSMUSG00000022568 ENSMUST00000002603 N/A N/A N/A 7.646±2.35 N/A N/A 1.408±0.21 N/A N/A N/A 1.312±0.65 N/A N/A 6.682±1.51
ENSMUST00000063747 10.679±4.46 11.464±3.15 11.885±1.15 10.681±4.95 13.248±5.63 24.117±2.10 3.431±0.83 10.649±1.19 6.836±2.62 15.528±1.33 1.142±0.51 23.276±8.23 9.944±2.08 36.642±4.52
ENSMUST00000109946 N/A N/A N/A 14.635±2.86 N/A N/A N/A N/A 0.814±0.00 N/A N/A N/A N/A N/A
ENSMUST00000136390 3.771±0.16 7.355±0.80 6.570±0.94 8.837±0.00 6.516±0.89 8.496±2.35 2.586±0.66 3.830±1.35 2.294±0.67 5.577±0.33 1.399±0.25 7.462±0.97 5.006±1.40 9.615±0.02
ENSMUST00000145830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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