C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline-rich coiled-coil 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357304 PRRC2B-201 ENSG00000130723 9606 + 9:131430090-131500171 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000357304
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000357304 13.436±0.00 8.610±0.00 1.111±0.00 2.291±0.00 11.215±0.00 10.850±0.00 1.097±0.00 0.580±0.00 3.982±1.01 2.987±1.81 5.348±0.00 7.363±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0002ED CIL_0002ED_0002 CGP 9:131289694-131500197
CIL_0006ID CIL_0006ID_0001 CGP 9:131394093-131523806

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069817 Prrc2b-201 protein_coding Mus_musculus 0 6741
ENSMUST00000036691 Prrc2b-001 protein_coding Mus_musculus 0 2614
ENSMUST00000132459 Prrc2b-002 protein_coding Mus_musculus 0 2603
ENSMUST00000140015 Prrc2b-008 processed_transcript Mus_musculus 0 861
ENSMUST00000123270 Prrc2b-004 processed_transcript Mus_musculus 0 833
ENSMUST00000129626 Prrc2b-009 processed_transcript Mus_musculus 0 778
ENSMUST00000128936 Prrc2b-006 protein_coding Mus_musculus 0 715
ENSMUST00000156313 Prrc2b-005 protein_coding Mus_musculus 0 579
ENSMUST00000141053 Prrc2b-010 processed_transcript Mus_musculus 0 302
ENSMUST00000142219 Prrc2b-007 processed_transcript Mus_musculus 0 219

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