C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choroideremia (Rab escort protein 1)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357749 CHM-001 ENSG00000188419 9606 - X:85861180-86047562 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357749 1.961±0.00 1.566±0.00 2.437±0.00 4.038±0.06 2.999±1.16 1.966±0.56 1.202±0.83 1.977±0.95 1.352±0.69 1.136±0.27 1.623±0.00 1.539±0.30 1.251±0.01 1.632±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KH CIL_0003KH_0001 CGP X:85277396-86047562
CIL_0003LE CIL_0003LE_0001 CGP X:85861180-86832604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IEA blood vessel development
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005096 IEA GTPase activator activity
GO:0005829 IMP cytosol
GO:0005968 IDA Rab-protein geranylgeranyltransferase complex
GO:0006612 IMP protein targeting to membrane
GO:0007601 IEA visual perception
GO:0017137 IDA Rab GTPase binding
GO:0018344 IDA protein geranylgeranylation
GO:0043547 IEA positive regulation of GTPase activity
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026607 Chm-001 protein_coding Mus_musculus 0 1698
ENSMUST00000113388 Chm-002 protein_coding Mus_musculus 0 1417
ENSMUST00000135821 Chm-003 processed_transcript Mus_musculus 0 1127
ENSMUST00000133469 Chm-004 processed_transcript Mus_musculus 0 340

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