C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 40, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357890 RNF40-009 ENSG00000103549 9606 + 16:30762322-30775215 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VK CIL_0003VK_0002 CGP 16:30748270-30762710
CIL_00044V CIL_00044V_0002 CGP 16:30757423-30776307
CIL_0000TY CIL_0000TY_0001 CGP 16:30761745-30787202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IDA ubiquitin ligase complex
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0010390 IDA histone monoubiquitination
GO:0016020 IDA membrane
GO:0016874 IEA ligase activity
GO:0031625 IPI ubiquitin protein ligase binding
GO:0033503 IDA HULC complex
GO:0033523 IDA histone H2B ubiquitination
GO:0042803 IPI protein homodimerization activity
GO:0043005 ISS neuron projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033088 Rnf40-201 protein_coding Mus_musculus 0 2119

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