C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23 homolog B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358015 RAD23B-001 ENSG00000119318 9606 + 9:107283279-107332194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358015 35.814±0.00 21.480±0.00 5.235±0.00 12.941±0.90 29.720±22.27 21.951±12.61 14.934±7.79 19.237±5.25 21.621±8.94 16.897±9.45 27.175±20.05 23.818±4.25 23.985±11.40 43.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000225 CIL_000225_0002 CGP 9:107283137-107490482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000715 IDA nucleotide-excision repair, DNA damage recognition
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003684 IEA damaged DNA binding
GO:0003697 TAS single-stranded DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006281 TAS DNA repair
GO:0006289 IDA:IEA nucleotide-excision repair
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007283 IEA spermatogenesis
GO:0031593 IDA polyubiquitin binding
GO:0032434 IDA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0071942 IDA XPC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030134 Rad23b-001 protein_coding Mus_musculus 0 2745
ENSMUST00000156263 Rad23b-003 processed_transcript Mus_musculus 0 684
ENSMUST00000174329 Gm4287-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000127266 Rad23b-002 processed_transcript Mus_musculus 0 231
ENSMUST00000148719 Rad23b-004 processed_transcript Mus_musculus 4e-22 111

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