C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 346
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358149 ZNF346-001 ENSG00000113761 9606 + 5:177022696-177065985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358149 2.077±0.00 2.641±0.00 1.146±0.00 2.079±0.45 0.981±0.00 2.350±0.00 0.800±0.33 1.777±0.00 1.028±0.03 1.783±0.00 0.865±0.00 2.021±1.46 2.086±0.11 3.380±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OX CIL_0000OX_0003 CGP 5:176905005-177081189
CIL_0000OR CIL_0000OR_0002 CGP 5:177022696-177098144

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0019899 IPI enzyme binding
GO:0043065 IEA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021937 Zfp346-001 protein_coding Mus_musculus 0 1092
ENSMUST00000159147 Zfp346-002 protein_coding Mus_musculus 0 665
ENSMUST00000159278 Zfp346-004 protein_coding Mus_musculus 0 652
ENSMUST00000161077 Zfp346-009 protein_coding Mus_musculus 0 641
ENSMUST00000162476 Zfp346-003 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000161315 Zfp346-007 protein_coding Mus_musculus 0 425
ENSMUST00000161018 Zfp346-006 nonsense_mediated_decay Mus_musculus 0 425
ENSMUST00000162428 Zfp346-012 nonsense_mediated_decay Mus_musculus 0 424
ENSMUST00000160660 Zfp346-008 nonsense_mediated_decay Mus_musculus 0 422
ENSMUST00000160310 Zfp346-010 retained_intron Mus_musculus 0 409
ENSMUST00000161551 Zfp346-013 nonsense_mediated_decay Mus_musculus 0 355
ENSMUST00000162288 Zfp346-005 retained_intron Mus_musculus 0 206

Loading