C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359440 TMC3-001 ENSG00000188869 9606 - 15:81331217-81374213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000359440
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000359440 0.039±0.00 0.060±0.00 0.057±0.01 0.020±0.00 0.154±0.00 0.017±0.00 0.046±0.00 0.135±0.00 0.022±0.00 0.030±0.01 0.056±0.01 0.266±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CN CIL_0009CN_0001 VISTA 15:80790387-81397930
CIL_00071F CIL_00071F_0002 CGP 15:81331217-82046141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006811 IEA ion transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164944 Tmc3-003 protein_coding Mus_musculus 0 2928
ENSMUST00000039317 Tmc3-001 protein_coding Mus_musculus 0 2416
ENSMUST00000163297 Tmc3-004 retained_intron Mus_musculus 0 2362
ENSMUST00000165388 Tmc3-002 retained_intron Mus_musculus 0 390
ENSMUST00000171397 Tmc3-005 retained_intron Mus_musculus 0 305

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