C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 239
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361033 TMEM239-002 ENSG00000198326 9606 + 20:2816302-2820284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverOvaryPlacentaENST00000361033
Transcript ID Adipose Breast Colon Kidney Liver Ovary Placenta
ENST00000361033 0.014±0.00 0.026±0.00 0.036±0.00 0.021±0.00 0.011±0.00 0.022±0.01 0.026±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0001 VISTA 20:2438562-3039143
CIL_0000FQ CIL_0000FQ_0001 CGP 20:2794069-2818066
CIL_0000FP CIL_0000FP_0001 CGP 20:2814968-2818066
CIL_00006C CIL_00006C_0001 CGP 20:2814987-2820284
CIL_00006D CIL_00006D_0001 CGP 20:2816302-2841190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055421 Tmem239-001 protein_coding Mus_musculus 0 604
ENSMUST00000188900 RP23-29K12.9-001 protein_coding Mus_musculus 0 603
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000002 60
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00002 57

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