C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361288 TAF11-001 ENSG00000064995 9606 - 6:34877778-34888089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361288
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361288 6.700±0.00 12.946±0.00 6.630±1.71 6.923±2.97 7.044±3.22 4.170±2.69 5.940±2.76 3.845±1.58 4.509±2.94 5.942±0.00 10.577±3.64 14.099±0.84 18.004±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000259 CIL_000259_0001 CGP 6:34757406-34883138
CIL_0002EW CIL_0002EW_0001 CGP 6:34792015-34888089
CIL_0002EV CIL_0002EV_0001 CGP 6:34877778-35091413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005669 IDA transcription factor TFIID complex
GO:0005794 IDA Golgi apparatus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 IC:IEA transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0042809 IPI vitamin D receptor binding
GO:0043565 IEA sequence-specific DNA binding
GO:0043923 IDA positive regulation by host of viral transcription
GO:0046966 IPI thyroid hormone receptor binding
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IPI protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025057 Taf11-201 protein_coding Mus_musculus 0 647
ENSMUST00000114848 Taf11-001 protein_coding Mus_musculus 0 647
ENSMUST00000155667 Taf11-002 processed_transcript Mus_musculus 0 390

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