C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thymocyte selection-associated high mobility group box
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361421 TOX-001 ENSG00000198846 9606 - 8:58805418-59119208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361421 0.211±0.00 1.416±0.00 0.249±0.00 4.467±2.21 0.412±0.00 3.149±1.46 0.140±0.03 0.604±0.59 0.322±0.25 1.159±0.53 0.016±0.00 0.743±0.47 0.876±0.31 1.885±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PQ CIL_0008PQ_0001 VISTA 8:58557235-59160028
CIL_0001SZ CIL_0001SZ_0001 CGP 8:58583504-59119208
CIL_00092W CIL_00092W_0001 VISTA 8:58728655-59331077
CIL_0003G3 CIL_0003G3_0001 CGP 8:58805418-60281412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039987 Tox-001 protein_coding Mus_musculus 0 3465
ENSMUST00000147657 Tox-002 retained_intron Mus_musculus 0 861
ENSMUST00000125974 Tox-003 processed_transcript Mus_musculus 0 782
ENSMUST00000150082 Tox-004 retained_intron Mus_musculus 0 529
ENSDART00000113342 tox3-001 protein_coding Danio_rerio 0 219

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