C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361804 SMC3-001 ENSG00000108055 9606 + 10:110567691-110604636 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361804
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361804 11.222±0.00 11.604±0.00 1.352±0.00 4.248±1.81 4.045±1.76 6.365±4.68 5.257±0.00 5.211±3.09 3.415±0.75 3.859±1.59 3.108±2.84 21.683±18.18 7.219±3.59 55.317±16.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FC CIL_0006FC_0001 CGP 10:110567691-110839469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000775 TAS chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0000800 IEA lateral element
GO:0000922 IDA spindle pole
GO:0003682 IEA chromatin binding
GO:0003777 NAS microtubule motor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005604 TAS basement membrane
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 TAS:IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006275 IMP regulation of DNA replication
GO:0006281 IEA DNA repair
GO:0007052 IEP mitotic spindle organization
GO:0007062 NAS sister chromatid cohesion
GO:0007064 IEA mitotic sister chromatid cohesion
GO:0007067 TAS mitotic nuclear division
GO:0007126 IDA meiotic nuclear division
GO:0007165 IDA signal transduction
GO:0008278 NAS cohesin complex
GO:0008280 IEA cohesin core heterodimer
GO:0016363 IDA nuclear matrix
GO:0019827 IEA stem cell maintenance
GO:0030893 IDA meiotic cohesin complex
GO:0032876 IMP negative regulation of DNA endoreduplication
GO:0034991 IEA nuclear meiotic cohesin complex
GO:0036033 IEA mediator complex binding
GO:0045502 IDA dynein binding
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025930 Smc3-001 protein_coding Mus_musculus 0 5138
ENSMUST00000171083 Smc3-003 retained_intron Mus_musculus 0 276
ENSMUST00000122438 Gm11204-001 processed_pseudogene Mus_musculus 0 250

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