C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108055-ENSG00000203867 CGP 9606 10:110567691-110839469
GeneTranscriptPositionBiotype
ENSG00000108055 (SMC3)
structural maintenance of chromosomes 3 		ENST00000361804 (SMC3-001) 110567691-110604636 protein_coding
ENST00000462899 (SMC3-002) 110568327-110582006 processed_transcript
ENSG00000203867 (RBM20)
RNA binding motif protein 20 		ENST00000369519 (RBM20-001) 110644397-110839469 protein_coding
ENST00000465774 (RBM20-008) 110835178-110836258 retained_intron
ENST00000471172 (RBM20-006) 110823588-110831513 processed_transcript
ENST00000480343 (RBM20-007) 110827771-110836234 processed_transcript
ENSG00000223302 (Y_RNA)
Y RNA 		ENST00000411370 (Y_RNA.1-833) 110642678-110642785 misc_RNA
ENSG00000252036 (RN7SKP288)
RNA, 7SK small nuclear pseudogene 288 		ENST00000516227 (RN7SKP288-201) 110756456-110756723 misc_RNA
CIL_0006FC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024974-ENSMUSG00000043639 CGP 10090 19:53600398-53867080
GeneTranscriptPositionBiotype
ENSMUSG00000024974 (Smc3)
structural maintenance of chromosomes 3 		ENSMUST00000025930 (Smc3-001) 53600398-53645833 protein_coding
ENSMUST00000157053 (Smc3-002) 53635467-53636495 retained_intron
ENSMUST00000171083 (Smc3-003) 53643358-53644808 retained_intron
ENSMUSG00000043639 (Rbm20)
RNA binding motif protein 20 		ENSMUST00000095969 (Rbm20-001) 53677306-53843763 protein_coding
ENSMUST00000161856 (Rbm20-002) 53843210-53867080 nonsense_mediated_decay
ENSMUST00000162910 (Rbm20-003) 53793308-53813573 processed_transcript
ENSMUST00000164202 (Rbm20-201) 53677306-53867080 protein_coding
ENSMUSG00000089679 (Gm16299)
predicted gene 16299 		ENSMUST00000162724 (Gm16299-001) 53819354-53825128 antisense
ENSMUSG00000089807 (Gm16298)
predicted gene 16298 		ENSMUST00000161107 (Gm16298-001) 53767891-53768310 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FC_0001ENSG00000108055ENST00000361804ENST00000462899ENSG00000203867ENST00000369519ENST00000465774ENST00000471172ENST00000480343ENSG00000223302ENST00000411370ENSG00000252036ENST00000516227CIL_0006FC_0002ENSMUSG00000024974ENSMUST00000025930ENSMUST00000157053ENSMUST00000171083ENSMUSG00000043639ENSMUST00000095969ENSMUST00000161856ENSMUST00000162910ENSMUST00000164202ENSMUSG00000089679ENSMUST00000162724ENSMUSG00000089807ENSMUST00000161107
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FC_0001ENSG00000108055ENST00000361804ENSG00000203867ENST00000369519ENST00000465774ENSG00000223302ENST00000411370ENSG00000252036ENST00000516227CIL_0006FC_0002ENSMUSG00000024974ENSMUST00000025930ENSMUSG00000043639ENSMUST00000095969ENSMUST00000161856ENSMUST00000162910ENSMUST00000164202ENSMUSG00000089679ENSMUST00000162724ENSMUSG00000089807ENSMUST00000161107
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108055 ENST00000361804 11.222±0.00 11.604±0.00 1.352±0.00 4.248±1.81 4.045±1.76 6.365±4.68 5.257±0.00 5.211±3.09 3.415±0.75 3.859±1.59 3.108±2.84 21.683±18.18 7.219±3.59 55.317±16.85
ENST00000462899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203867 ENST00000369519 0.335±0.00 0.148±0.00 0.093±0.00 0.108±0.00 0.197±0.02 0.671±0.00 16.337±8.76 0.058±0.02 0.063±0.05 0.179±0.02 3.673±2.00 0.115±0.05 0.138±0.05 0.664±0.00
ENST00000465774 N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A N/A N/A
ENST00000471172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223302 ENST00000411370 N/A N/A N/A 0.582±0.00 N/A N/A 0.740±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000252036 ENST00000516227 N/A N/A 2.639±0.00 N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A 0.288±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024974 ENSMUST00000025930 3.449±1.30 6.567±0.62 5.655±0.65 18.442±7.04 2.846±0.91 4.022±1.20 1.848±0.51 3.266±0.49 10.146±9.10 5.276±0.45 2.689±0.53 10.986±14.79 43.332±38.60 21.459±29.36
ENSMUST00000157053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000043639 ENSMUST00000095969 N/A 0.092±0.00 N/A N/A N/A N/A N/A 0.401±0.09 N/A 0.470±0.15 N/A 0.243±0.03 N/A 0.094±0.00
ENSMUST00000161856 0.163±0.00 0.372±0.13 N/A 0.597±0.00 N/A 1.369±0.00 N/A 0.300±0.00 0.287±0.08 N/A N/A 1.114±0.14 1.388±0.94 0.161±0.01
ENSMUST00000162910 N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164202 0.293±0.22 0.063±0.00 0.381±0.03 0.222±0.03 0.432±0.00 0.140±0.02 25.545±1.44 0.249±0.02 0.061±0.02 0.416±0.21 8.246±3.22 0.231±0.06 0.519±0.34 0.101±0.03
ENSMUSG00000089679 ENSMUST00000162724 0.263±0.07 0.390±0.11 0.192±0.04 0.117±0.10 0.411±0.17 0.124±0.04 0.721±0.05 0.109±0.05 0.137±0.16 0.085±0.06 0.382±0.19 0.251±0.11 0.076±0.04 0.147±0.10
ENSMUSG00000089807 ENSMUST00000161107 N/A N/A 0.060±0.03 0.028±0.00 N/A 0.214±0.00 0.488±0.23 0.121±0.00 N/A N/A 0.162±0.01 N/A 0.159±0.09 N/A

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