C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361917 COL11A2-202 ENSG00000204248 9606 - 6:33162692-33192468 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000361917
Transcript ID Adrenal Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000361917 0.162±0.00 0.043±0.00 0.093±0.08 0.072±0.00 0.029±0.00 0.383±0.00 0.156±0.02 0.040±0.01 0.447±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IEA collagen trimer

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114252 Col11a2-201 protein_coding Mus_musculus 0 5155
ENSMUST00000087497 Col11a2-001 protein_coding Mus_musculus 0 5153
ENSMUST00000114255 Col11a2-202 protein_coding Mus_musculus 0 5151
ENSMUST00000143354 Col11a2-003 protein_coding Mus_musculus 0 2953
ENSMUST00000144927 Col11a2-006 retained_intron Mus_musculus 0 965
ENSMUST00000131134 Col11a2-002 protein_coding Mus_musculus 0 942
ENSMUST00000173749 Col11a2-007 processed_transcript Mus_musculus 0 531
ENSMUST00000137374 Col11a2-005 retained_intron Mus_musculus 0 267

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