C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, gamma 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361925 GABRG2-002 ENSG00000113327 9606 + 5:162067780-162153483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverTestisENST00000361925
Transcript ID Colon Kidney Liver Testis
ENST00000361925 0.213±0.00 0.010±0.00 0.110±0.00 0.198±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00016P CIL_00016P_0002 CGP 5:161847191-162155536

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 ISS chloride channel activity
GO:0005515 IPI protein binding
GO:0005886 IEA:TAS plasma membrane
GO:0005887 ISS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007268 TAS synaptic transmission
GO:0008503 TAS benzodiazepine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0032590 ISS dendrite membrane
GO:0034220 IEA:TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0051932 ISS synaptic transmission, GABAergic
GO:0055085 TAS transmembrane transport
GO:0071420 ISS cellular response to histamine
GO:1902476 ISS chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070725 Gabrg2-001 protein_coding Mus_musculus 0 2194
ENSMUST00000070735 Gabrg2-003 protein_coding Mus_musculus 0 2054
ENSMUST00000109290 Gabrg2-002 protein_coding Mus_musculus 0 1537
ENSMUST00000146198 Gabrg2-004 retained_intron Mus_musculus 0 697

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