C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00016P_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000068989-ENSDARG00000053665 CGP 7955 21:40675972-40884038
GeneTranscriptPositionBiotype
ENSDARG00000053665 (gabrg2)
gamma-aminobutyric acid (GABA) A receptor, gamma 2 		ENSDART00000075740 (gabrg2-001) 40776436-40863791 protein_coding
ENSDART00000092821 (gabrg2-201) 40776705-40884038 protein_coding
ENSDARG00000068989 (gabra1)
gamma-aminobutyric acid (GABA) A receptor, alpha 1 		ENSDART00000100000 (gabra1-201) 40675972-40733032 protein_coding
ENSDART00000144767 (gabra1-001) 40728046-40733556 protein_coding
ENSDARG00000097196 (si:ch211-145n14.3)
si:ch211-145n14.3 		ENSDART00000154682 (si:ch211-145n14.3-001) 40736691-40739944 lincRNA
CIL_00016P_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000022355-ENSG00000113327 CGP 9606 5:161847191-162155536
GeneTranscriptPositionBiotype
ENSG00000022355 (GABRA1)
gamma-aminobutyric acid (GABA) A receptor, alpha 1 		ENST00000023897 (GABRA1-002) 161847191-161897666 protein_coding
ENST00000393943 (GABRA1-005) 161847934-161897666 protein_coding
ENST00000428797 (GABRA1-001) 161847679-161899969 protein_coding
ENST00000437025 (GABRA1-004) 161848444-161899954 protein_coding
ENST00000519542 (GABRA1-009) 161873098-161891002 retained_intron
ENST00000519621 (GABRA1-008) 161850597-161873230 protein_coding
ENST00000521339 (GABRA1-006) 161848892-161865788 protein_coding
ENST00000522651 (GABRA1-007) 161850386-161865789 protein_coding
ENSG00000113327 (GABRG2)
gamma-aminobutyric acid (GABA) A receptor, gamma 2 		ENST00000356592 (GABRG2-001) 162067540-162155536 protein_coding
ENST00000361925 (GABRG2-002) 162067780-162153483 protein_coding
ENST00000414552 (GABRG2-003) 162067775-162155522 protein_coding
ENST00000522053 (GABRG2-005) 162094534-162149137 protein_coding
ENST00000522990 (GABRG2-006) 162067874-162154045 nonsense_mediated_decay
ENST00000523372 (GABRG2-004) 162068000-162153804 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisCIL_00016P_0001ENSDARG00000053665ENSDART00000075740ENSDART00000092821ENSDARG00000068989ENSDART00000100000ENSDART00000144767ENSDARG00000097196ENSDART00000154682CIL_00016P_0002ENSG00000022355ENST00000023897ENST00000393943ENST00000428797ENST00000437025ENST00000519542ENST00000519621ENST00000521339ENST00000522651ENSG00000113327ENST00000356592ENST00000361925ENST00000414552ENST00000522053ENST00000522990ENST00000523372
Region; Gene Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisCIL_00016P_0001ENSDARG00000053665ENSDART00000075740ENSDART00000092821ENSDARG00000068989ENSDART00000100000ENSDART00000144767ENSDARG00000097196ENSDART00000154682CIL_00016P_0002ENSG00000022355ENST00000023897ENST00000393943ENST00000428797ENST00000437025ENST00000519542ENST00000521339ENSG00000113327ENST00000356592ENST00000361925ENST00000414552ENST00000522053ENST00000522990ENST00000523372
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSDARG00000053665 ENSDART00000075740 N/A N/A 9.211±0.00 N/A N/A N/A N/A 0.058±0.00 N/A 0.525±0.00 N/A N/A
ENSDART00000092821 N/A N/A 11.558±0.00 N/A N/A 0.029±0.01 0.032±0.01 0.019±0.00 N/A 0.652±0.00 N/A N/A
ENSDARG00000068989 ENSDART00000100000 N/A N/A 25.192±0.00 N/A N/A N/A N/A 0.057±0.00 N/A 2.892±0.00 N/A N/A
ENSDART00000144767 N/A N/A 48.276±0.00 N/A N/A N/A 0.876±0.54 N/A N/A 1.063±0.00 N/A N/A
ENSDARG00000097196 ENSDART00000154682 N/A N/A 72.895±13.95 N/A N/A N/A 0.085±0.03 0.072±0.00 N/A 2.648±0.00 N/A N/A
Gene Transcript Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSG00000022355 ENST00000023897 0.026±0.00 N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000393943 N/A N/A 18.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00
ENST00000428797 N/A 0.036±0.00 19.009±14.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000437025 0.033±0.00 N/A 24.188±0.00 0.003±0.00 0.017±0.00 N/A 0.013±0.00 N/A N/A 0.016±0.00 0.040±0.00 0.040±0.00
ENST00000519542 N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A
ENST00000519621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521339 N/A N/A N/A N/A N/A N/A N/A 0.224±0.00 N/A N/A 0.122±0.00 0.119±0.00
ENST00000522651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000113327 ENST00000356592 N/A N/A 10.558±7.27 N/A 0.025±0.00 N/A N/A 0.023±0.00 N/A N/A N/A N/A
ENST00000361925 N/A N/A N/A N/A 0.213±0.00 N/A 0.010±0.00 0.110±0.00 N/A N/A N/A 0.198±0.08
ENST00000414552 0.005±0.00 N/A 9.467±0.00 0.058±0.05 N/A 0.032±0.00 N/A N/A 0.014±0.00 0.010±0.00 0.061±0.05 N/A
ENST00000522053 N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000522990 N/A N/A 14.377±0.00 0.089±0.00 N/A N/A N/A N/A N/A N/A 0.036±0.00 0.059±0.00
ENST00000523372 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.104±0.00 0.135±0.07

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