C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: deafness, autosomal recessive 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000362057 DFNB31-004 ENSG00000095397 9606 - 9:114402081-114504970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000362057
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000362057 0.796±0.00 1.024±0.00 5.592±0.00 0.592±0.00 0.842±0.00 0.015±0.00 1.158±0.00 0.182±0.01 1.839±1.59 5.574±2.14 0.689±0.48 20.463±10.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002C9 CIL_0002C9_0002 CGP 9:114334156-114505450
CIL_0004P9 CIL_0004P9_0001 CGP 9:114402080-114598373

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0002142 IEA stereocilia ankle link complex
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005884 IEA actin filament
GO:0005929 IEA cilium
GO:0007605 IMP sensory perception of sound
GO:0010628 IEA positive regulation of gene expression
GO:0032391 IEA photoreceptor connecting cilium
GO:0032420 ISS stereocilium
GO:0032421 IEA stereocilium bundle
GO:0050953 IMP sensory perception of light stimulus
GO:0060122 ISS inner ear receptor stereocilium organization
GO:1990075 IEA periciliary membrane compartment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063650 Whrn-001 protein_coding Mus_musculus 0 3053
ENSMUST00000102867 Whrn-002 protein_coding Mus_musculus 0 3035
ENSMUST00000107393 Whrn-004 protein_coding Mus_musculus 0 3009
ENSMUST00000063672 Whrn-017 protein_coding Mus_musculus 0 2137
ENSMUST00000084510 Whrn-005 protein_coding Mus_musculus 0 2137
ENSMUST00000124016 Whrn-011 processed_transcript Mus_musculus 0 2061
ENSMUST00000155058 Whrn-009 retained_intron Mus_musculus 0 1408
ENSMUST00000119294 Whrn-007 protein_coding Mus_musculus 0 1404
ENSMUST00000133425 Whrn-014 protein_coding Mus_musculus 0 604
ENSMUST00000140720 Whrn-015 retained_intron Mus_musculus 0 508
ENSMUST00000145133 Whrn-010 retained_intron Mus_musculus 0 492
ENSMUST00000095038 Whrn-006 protein_coding Mus_musculus 0 488
ENSMUST00000153307 Whrn-013 retained_intron Mus_musculus 0 263
ENSMUST00000144965 Whrn-016 protein_coding Mus_musculus 0 261
ENSMUST00000095037 Whrn-008 protein_coding Mus_musculus 0 220

Loading