C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fumarate hydratase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366560 FH-001 ENSG00000091483 9606 - 1:241497603-241519761 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366560 16.964±0.00 17.987±0.00 3.689±0.00 15.819±5.95 13.454±9.20 12.877±2.54 35.884±22.06 32.465±2.16 11.194±3.41 6.871±2.64 22.834±9.24 10.679±4.70 17.808±6.80 19.098±8.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L5 CIL_0000L5_0002 CGP 1:240775514-241519761
CIL_0000HM CIL_0000HM_0001 CGP 1:241497603-241595642

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004333 EXP:IEA fumarate hydratase activity
GO:0005737 TAS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006099 IEA tricarboxylic acid cycle
GO:0006106 IEA fumarate metabolic process
GO:0016829 IEA lyase activity
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045239 IEA tricarboxylic acid cycle enzyme complex
GO:0048873 IEA homeostasis of number of cells within a tissue
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027810 Fh1-001 protein_coding Mus_musculus 0 1794
ENSMUST00000118669 Gm7190-001 processed_pseudogene Mus_musculus 0 972
ENSMUST00000176740 Fh1-005 protein_coding Mus_musculus 0 577
ENSMUST00000133218 Fh1-003 retained_intron Mus_musculus 0 577
ENSMUST00000154956 Fh1-002 nonsense_mediated_decay Mus_musculus 0 512
ENSMUST00000130996 Fh1-004 retained_intron Mus_musculus 0 405

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