C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myocyte enhancer factor 2D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368240 MEF2D-201 ENSG00000116604 9606 - 1:156466218-156500753 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonHeartKidneyLungOvaryPlacentaTestisENST00000368240
Transcript ID Bladder Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000368240 0.998±0.00 2.052±0.00 1.522±0.00 1.880±0.00 1.549±0.00 5.223±2.58 3.919±0.00 5.193±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119251 Mef2d-002 protein_coding Mus_musculus 0 769
ENSMUST00000001455 Mef2d-001 protein_coding Mus_musculus 0 769
ENSMUST00000107559 Mef2d-004 protein_coding Mus_musculus 0 704
ENSMUST00000107558 Mef2d-003 protein_coding Mus_musculus 0 673
ENSDART00000044083 mef2cb-201 protein_coding Danio_rerio 0 303
ENSDART00000135911 mef2cb-001 protein_coding Danio_rerio 0 303
ENSMUST00000163888 Mef2c-202 protein_coding Mus_musculus 0 298
ENSMUST00000185052 Mef2c-001 protein_coding Mus_musculus 0 298
ENSMUST00000005722 Mef2c-201 protein_coding Mus_musculus 0 259
ENSMUST00000140927 Mef2d-005 retained_intron Mus_musculus 0 224
ENSMUST00000152861 Mef2d-007 processed_transcript Mus_musculus 4e-34 150

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