C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TRAF3 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368761 TRAF3IP2-004 ENSG00000056972 9606 - 6:111556454-111606246 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLiverMuscleOvaryENST00000368761
Transcript ID Adrenal Colon Heart Kidney Liver Muscle Ovary
ENST00000368761 0.780±0.00 0.606±0.00 0.310±0.00 0.443±0.00 0.143±0.00 0.595±0.00 0.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000954 CIL_000954_0001 VISTA 6:111250485-111855465
CIL_0001OP CIL_0001OP_0002 CGP 6:111299028-111606278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001783 IEA B cell apoptotic process
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006959 IEA humoral immune response
GO:0035556 NAS intracellular signal transduction
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0048305 IEA immunoglobulin secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019987 Traf3ip2-001 protein_coding Mus_musculus 0 1480
ENSMUST00000156016 Traf3ip2-003 retained_intron Mus_musculus 0 529
ENSMUST00000155945 Traf3ip2-005 retained_intron Mus_musculus 0 337
ENSMUST00000131629 Traf3ip2-004 processed_transcript Mus_musculus 0 226
ENSMUST00000145380 Ckmt1-003 retained_intron Mus_musculus 0.0000002 64
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.0003 53

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