C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369636 RHOC-005 ENSG00000155366 9606 - 1:112701325-112707120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryTestisENST00000369636
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Testis
ENST00000369636 112.236±0.00 56.270±0.00 80.196±0.00 72.699±0.00 10.052±7.37 65.395±0.00 151.776±0.00 22.047±0.00 5.314±0.00 57.414±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U6 CIL_0006U6_0002 CGP 1:112673141-112707434
CIL_000878 CIL_000878_0001 VISTA 1:112697401-113299438
CIL_0009BY CIL_0009BY_0001 VISTA 1:112697434-113299398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176347 Rhoc-004 protein_coding Mus_musculus 0 669
ENSMUST00000002303 Rhoc-001 protein_coding Mus_musculus 0 571
ENSMUST00000106787 Rhoc-002 protein_coding Mus_musculus 0 525
ENSMUST00000067384 Rhob-201 protein_coding Mus_musculus 0 302
ENSMUST00000132721 Rhoc-003 processed_transcript Mus_musculus 0 261

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