C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog gene family, member C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106787 Rhoc-002 ENSMUSG00000002233 10090 + 3:104789034-104794344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106787
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106787 15.936±3.88 22.104±3.74 2.834±0.00 21.920±6.55 41.413±17.71 6.341±0.51 5.337±0.56 0.883±0.19 13.443±2.14 3.086±0.00 21.198±7.66 44.173±10.75 0.432±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000878 CIL_000878_0002 VISTA 3:104296935-104900599
CIL_0009BY CIL_0009BY_0002 VISTA 3:104296978-104900566

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005886 IDA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0032154 ISS cleavage furrow
GO:0043297 IDA apical junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285735 RHOC-002 protein_coding Homo_sapiens 0 883
ENST00000339083 RHOC-001 protein_coding Homo_sapiens 0 883
ENST00000369632 RHOC-009 protein_coding Homo_sapiens 0 830
ENST00000369633 RHOC-201 protein_coding Homo_sapiens 0 883
ENST00000369636 RHOC-005 protein_coding Homo_sapiens 0 525
ENST00000369637 RHOC-004 protein_coding Homo_sapiens 0 893
ENST00000369638 RHOC-012 protein_coding Homo_sapiens 0 883
ENST00000369642 RHOC-003 protein_coding Homo_sapiens 0 883
ENST00000414971 RHOC-013 protein_coding Homo_sapiens 0 385
ENST00000425265 RHOC-008 protein_coding Homo_sapiens 0 795
ENST00000436685 RHOC-010 protein_coding Homo_sapiens 0 545
ENST00000468093 RHOC-007 nonsense_mediated_decay Homo_sapiens 0 676
ENST00000471038 RP11-426L16.10-001 processed_transcript Homo_sapiens 0 508
ENST00000473074 RHOC-014 retained_intron Homo_sapiens 0 496
ENST00000478447 RHOC-015 retained_intron Homo_sapiens 0 215
ENST00000484054 RHOC-006 protein_coding Homo_sapiens 0 385
ENST00000484280 RHOC-011 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000528831 RHOC-016 nonsense_mediated_decay Homo_sapiens 0 219
ENST00000534717 RHOC-018 protein_coding Homo_sapiens 0 721
ENST00000605933 RP11-426L16.10-003 protein_coding Homo_sapiens 0 457
ENST00000606505 RP11-426L16.10-002 protein_coding Homo_sapiens 0 457
ENST00000606954 RP11-426L16.10-005 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000607158 RP11-426L16.10-004 retained_intron Homo_sapiens 0 457

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